Sequence
atgc intronic sequence ATGC exonic sequencegtacttttcaaattctttagttttgctgatgtattaaattttaattttgaaagggatttctcatttatcttttgcaattactatttgtttttccatctattttgaagcttggtagtgatgggataatttttgtgatcgtgcacagGCTGTAGAATTTGTGAATATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGTCTTAACAAACCTGAAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 15
gtacttttcaaattctttagttttgctgatgtattaaattttaattttgaaagggatttctcatttatcttttgcaattactatttgtttttccatctattttgaagcttggtagtgatgggataatttttgtgatcgtgcacagGCTGTAGAATTTGTGAATATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGTCTTAACAAACCTGAAATG
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-------gtacattattt--tttttcaattgaattggtttttggtttcaacaaa-------catctaacttgtg-aatgagaact-------ctggtgatttt-aagtttga-agcggtc--ataattttt---------tgcagGCCGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATG
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA11G19660.1 (Glycine max), 3'ss of exon 15
gtacttttcaaattctttagttttgctgatgtattaaattttaattttgaaagggatttctcatttatcttttgcaattactatttgtttttccatctattttgaagcttggtagtgatgggataatttttgtgatcgtgcacagGCTGTAGAATTTGTGAATATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGTCTTAACAAACCTGAAATG
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-------gtacattatttttttcagttga---attggtttttggtttcaacaaa-------catctaacttgtg-aatcagaact-------ctggtgatttt-aagtttga-agtggtc--atagttttt---------tgcagGCCGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATG
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 15
gtacttttcaaattctttagttttgctgatgtattaaattttaattttgaaagggatttctcatttatcttttgcaattactatttgtttttccatctattttgaagcttggtagtgatgggataatttttgtgatcgtgcacagGCTGTAGAATTTGTGAATATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGTCTTAACAAACCTGAAATG-------------------
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-------gtacattatttttttcagttga---attggtttttggtttcaacaaa-------catctaacttgtg-aatcagaact-------ctggtgatttt-aagtttga-agtggtc--atagttttt---------tgcagGCCGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATGGTATAATCATGATAACTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccatctattttgaagcttggtagtgatgggataatttttgtgatcgtgcacagGCTGTAGAATTTGTGAATATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGTCTTAACAAACCTGAAATG
ataatttttgtgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacttttcaaattctttagttttgctgatgtattaaattttaattttgaaagggatttctcatttatcttttgcaattactatttgtttttccatctattttgaagcttggtagtgatgggataatttttgtgatcgtgcacagGCTGTAGAATTTGTGAATATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGTCTTAACAAACCTGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA