Sequence
atgc intronic sequence ATGC exonic sequence...ttcaaccttagtttctccttgttttcctttatcatcattatcatcttcatcatcatactcctgttaatgatcataaaaatgttgtctttggtatgtgcagCCGCCCAACTGCACTGCAAGACAGGACAAGGGATAGTGATGAGGATGACCTTCATGACAGAGATTATGACGTAGCAGCTCTAGCAAATAATCTAAGCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA12G08100.1 (Glycine max), 3'ss of exon 15
--ttcaacct-tagtttctccttgttttcctttatcatcattatcatcttcatcatcatactcctgttaatgatcataaaaatgttgtctttggtatgtgcagCCGCCCAACTGCACTGCAAGACAGGACAAGGGATAGTGATGAGGATGACCTTCATGACAGAGATTATGACGTAGCAGCTCTAGCAAATAATCTAAGCCAG
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ggttgggtgggcaaaattttgttcatgaaatttaaaat-ataggggagtggatgttgtgaatccttt--ataattatttcttatttctccttgttatgtgcagACGTCCAACTGCATTACAAGATAGGATGAGGGATAGTGATGATGAAGACCTTCATGACAGAGACTATGATGTTGCAGCTTTAGCAAATAATTTAAGCCAG
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA13G40050.1 (Glycine max), 3'ss of exon 15
ttcaaccttagtttctccttgttttcctttatcatca--ttatcatcttcatca-tcatactcctgttaatg-atcataaaaatgttgtctttggtatgtgcagCCGCCCAACTGCACTGCAAGACAGGACAAGGGATAGTGATGAGGATGACCTTCATGACAGAGATTATGACGTAGCAGCTCTAGCAAATAATCTAAGCCAG
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----aattgtgtcttttatgtttctgttatatgtttactttgttatgttgggggctctttcccattttgatttatctgtttatttttccttttcttgtgtacagACGTCCGACTGCTTTACAAGATAGGATGAGGGATAGTGATGATGATGACCTTCATGACAGGGACTATGATGTTGCAGCTCTAGCAAATAATTTGAGCCAG
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA12G29710.2 (Glycine max), 3'ss of exon 15
ttcaaccttagtttctccttgttttcctttatcatcattatcatcttcatcatcatactcctgtt--aatgatcataaaaatgttgtctttggtatgtgcagCCGCCCAACTGCACTGCAAGACAGGACAAGGGATAGTGATGAGGATGACCTTCATGACAGAGATTATGACGTAGCAGCTCTAGCAAATAATCTAAGCCAG
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tgtgtcttttatgtttc--tgtttcatgttgtttactttgttatgttggggggtctttcccaatttgatttgtctgtttatttttccttttcctttgtacagACGTCCGACTGCTTTACAAGATAGGATGAGGGATAGTGATGATGATGAACTTCATGACAGAGACTATGATGTTGCAGCTCTAGCAAATAATTTGAACCAG
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA11G20500.1 (Glycine max), 3'ss of exon 15
ttcaaccttagtttctccttgttttcctttatcatcattatcatcttcatcatcatactcctgt-taatgatcataaaaatgttgtct----ttggtatgtgcagCCGCCCAACTGCACTGCAAGACAGGACAAGGGATAGTGATGAGGATGACCTTCATGACAGAGATTATGACGTAGCAGCTCTAGCAAATAATCTAAGCCAG
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--tgggcacaattttg---tgtattaaattaaaaatataggggagtgaatgttgtgaatcctttatcattttgcttgatttcttatttctccttgttaagtgcagACGTCCAACTTCATTACAAGATAGGATGAGGGATAGTGATGATGAAGACCTTCATGACAGAGACTATGATGTTGCAGCTTTAGCAAATAATTTGAGCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcatcatcatactcctgttaatgatcataaaaatgttgtctttggtatgtgcagCCGCCCAACTGCACTGCAAGACAGGACAAGGGATAGTGATGAGGATGACCTTCATGACAGAGATTATGACGTAGCAGCTCTAGCAAATAATCTAAGCCAG
tgttaat putative branch site (score: 3)
ttaatgatcataaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcaaccttagtttctccttgttttcctttatcatcattatcatcttcatcatcatactcctgttaatgatcataaaaatgttgtctttggtatgtgcagCCGCCCAACTGCACTGCAAGACAGGACAAGGGATAGTGATGAGGATGACCTTCATGACAGAGATTATGACGTAGCAGCTCTAGCAAATAATCTAAGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
ttcaacc
- - - - - - - ctccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc