Sequence
atgc intronic sequence ATGC exonic sequence...ctcacctttttacttaaaagtgcttaaaaataagatatgacttcctatatgtgcatgtaaaccaacaacattcaaaacatttttgttttttcctttgcagGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: LOC_Os07g22400.2 (Oryza sativa), 3'ss of exon 15
ctcacctttttacttaaaagtgcttaaaaataagatatgacttcctatatgtgcatgtaaaccaacaacattcaaaacatttttgttttttcctttgcagGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAG
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---------------gtaagccccttgttctat--ttttgttgcttgtttggataatcaacttattcatctctcagacaaat--ggctcctcc-----agGATTACACTCCGTATTCATGTCAAAAGATTATCTCTGCAACACCTGGTGTTGGTGATCACCATGGTTGCCCTTATCGACATTTTGG
upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA05G28150.1 (Glycine max), 3'ss of exon 15
-----------------------------------------------------ctcacctttttacttaaaagtgcttaaaaataagatatgacttcctatatg-tgcatgtaaac--caacaacattca--aaacatttttgttttttcctttgcagGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAG
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gtaagttctgaatttccccactgatttatgggatgtttcaaatatatttctgttgctgatttccattttgaaacac--aaaatttcaatgtttttgtatgcataatgcatgtatatgatgatgagtttcaacaagtaatattttgatggatgttacagGATTATACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGGGATCATCATGGTTGCCCCTATCGACATTTCAG
upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA08G11130.1 (Glycine max), 3'ss of exon 15
--------------------------------------------------------ctcacctttttacttaa---aagtgcttaaaaataagatatgac--ttcctatatg-----tgcatgtaaacca--acaacattca--aaacatttttgttttttcctttgcagGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAG
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gtaagttttgaatttcccccactgatttatgagatgttttaaatatatttctgttactgatttctattttgaaactaggctttgaaacacaaaatttcaatgtttttgtatgcataatgcatgcatattatgatgagtttcaacaagtaatattttgatggatgttacagGACTACACTCCCTATTCTTGTCAAAAGATTATTTCATCAACTCCTGGAGCTGGAGATCATCATGGTTGCCCTTATCGAAATTTCAG
upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT1G67320.2 (Arabidopsis thaliana), 3'ss of exon 15
--------ctcacctttttacttaaaagtgcttaaaaataagatatgacttcctatatgtg-catgtaaaccaacaacattca-------aaacatttttgttttttcctttgcagGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAG
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gtaagtacctaactgtcctttctaggccatttttttccagagttctcatctcttatttatgtcattgaaagtggcaatgatcagcttctgataccaaattcacattgcaatttcagGATTATACCCCTTATGCTTGTTCAAAGATCATCACATCTGCTCCTGGTGCTGGGGATCATCACGGCTGCCCTTATCGACATTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatatgtgcatgtaaaccaacaacattcaaaacatttttgttttttcctttgcagGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAG
catttttgttttttcc CT-rich tract
attcaaaacatttttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcacctttttacttaaaagtgcttaaaaataagatatgacttcctatatgtgcatgtaaaccaacaacattcaaaacatttttgttttttcctttgcagGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAG
ctcacct
- - - - - - cttaaaa
- - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaca