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...ctagacctatctctgctagggaaaagaacagatctggacacaaaaaataataatgatgacataaatgtagaaatcttatatggaccttttttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAACCAGCTCCAATGAGGACAACCACCAAGGAAGTCCACCAAATTTGACAA
species | Vitis vinifera |
transcript | Vv01s0150g00090.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATACAGGTGATCAG GTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAEST: gi|46910430|gb|CN545805.1|CN545805
genomic: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAGgtatgaggat ... ttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGA
EST: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAG GTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAEST: gi|32245817|gb|CD711636.1|CD711636
genomic: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAGgtatgaggat ... ttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGA
EST: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAG GTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAEST: gi|110732197|gb|EE107275.1|EE107275
genomic: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAGgtatgaggat ... ttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGA
EST: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAG GTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAEST: gi|110429936|gb|EC996451.1|EC996451
genomic: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAGgtatgaggat ... ttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGA
EST: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAG GTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAEST: gi|110379026|gb|EC944195.1|EC944195
genomic: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAGgtatgaggat ... ttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGA
EST: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAG GTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAEST: gi|110389267|gb|EC954091.1|EC954091
genomic: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAGgtatgaggat ... ttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGA
EST: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAG GTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAEST: gi|32245389|gb|CD711208.1|CD711208
genomic: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAGgtatgaggat ... ttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGA
EST: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAG GTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGA
genomic: GATGTCGTCCCATTCTCTTCCATACTGATGGTCCCAATGCAGGTGATCAGgtatgaggat ... ttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGA
aataataatgatgacataaatgtagaaatcttatatggaccttttttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAACCAGCTCCAATGAGGACAACCACCAAGGAAGTCCACCAAATTTGACAA
ccttttttctcggc CT-rich tract
ataaatgtagaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagacctatctctgctagggaaaagaacagatctggacacaaaaaataataatgatgacataaatgtagaaatcttatatggaccttttttctcggcagGTGCCTTTCCCAATGGGAGTAAATGTTCGATCTAGACCTGGAAAAACTCGAACCAGCTCCAATGAGGACAACCACCAAGGAAGTCCACCAAATTTGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -tctctgc
- - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaatc