1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...gatggccttaagaatgtttcatatttgtgtagtattgatgagtaggcatattctgcactagcacccagtttagttacattaccattcctgttcatttcagTGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGATGCTGGTAGTCGAGAG
species | Vitis vinifera |
transcript | Vv15s0046g03390.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CAGCTTCTCTCAGAACGACTAATTCCATTTGTTGCACTTGATGTGAGGAG TGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGAEST: gi|34546770|gb|CF515002.1|CF515002
genomic: CAGCTTCTCTCAGAACGACTAATTCCATTTGTTGCACTTGATGTGAGGAGgtaaagtttc ... ttcatttcagTGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGA
EST: CAGCTTCTCTCAGAACGACTAATTCCATTTGTTGCACTTGATGTGAGGAG TGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGAEST: gi|110425477|gb|EC991862.1|EC991862
genomic: CAGCTTCTCTCAGAACGACTAATTCCATTTGTTGCACTTGATGTGAGGAGgtaaagtttc ... ttcatttcagTGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGA
EST: GAACGACTAATTCCATTTGTTGCACTTGATGTGAGGAG TGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGA
genomic: GAACGACTAATTCCATTTGTTGCACTTGATGTGAGGAGgtaaagtttc ... ttcatttcagTGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGA
gcatattctgcactagcacccagtttagttacattaccattcctgttcatttcagTGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGATGCTGGTAGTCGAGAG
ttcctgttcatttc CT-rich tract
tttagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatggccttaagaatgtttcatatttgtgtagtattgatgagtaggcatattctgcactagcacccagtttagttacattaccattcctgttcatttcagTGATCGAGTTGCAATGGGGCGTGCCCTCGACCTTCCTGTTTATTTTGGAGATGCTGGTAGTCGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
gatggcc
- - - - - - - - - - - - - - - - - - - - -gtaggca
- - - - - - - - - - - - - - - - - - - - - - - - - ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaccca