1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ttttcctccatcggatgactatttccttacctgcatgtttttcttttaaattgaaatgtgacatttgtcatttatccatctctggttaaatcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTACATGTGTTGGGTCTTTACCATCCCTATGTGTGGGAGTACTCGCGGTTGA
species | Vitis vinifera |
transcript | Vv15s0021g01230.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTTCT-ACTACTGGTTATTEST: gi|351016500|gb|FQ423927.1|FQ423927
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTT-CTTACTACTGGTTATT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTAEST: gi|351016499|gb|FQ423926.1|FQ423926
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTAEST: gi|351025032|gb|FQ433449.1|FQ433449
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGEST: gi|351033348|gb|FQ446580.1|FQ446580
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTG
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTEST: gi|351027650|gb|FQ446817.1|FQ446817
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTAAT-AEST: gi|351024489|gb|FQ426298.1|FQ426298
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAAATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGGTATTAEST: gi|351046338|gb|FQ448643.1|FQ448643
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGEST: gi|351054204|gb|FQ450286.1|FQ450286
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTG
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTEST: gi|351019825|gb|FQ439642.1|FQ439642
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTAEST: gi|351033263|gb|FQ462035.1|FQ462035
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTAEST: gi|351054398|gb|FQ450481.1|FQ450481
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATNATGCTCATTGCATTGTAGATTCTCTTGAGACCATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTEST: gi|349832664|gb|FQ422022.1|FQ422022
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTEST: gi|351056659|gb|FQ443286.1|FQ443286
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTEST: gi|351028040|gb|FQ425941.1|FQ425941
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCAATCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTEST: gi|351042076|gb|FQ456286.1|FQ456286
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTAEST: gi|351046877|gb|FQ454487.1|FQ454487
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACCGCGTGCTTCTTACTACTGGTTATTAEST: gi|351035498|gb|FQ463343.1|FQ463343
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGATTTTGAGACACGGCGTGCEST: gi|351031204|gb|FQ445031.1|FQ445031
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGC
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTAAGACACGGCGTGCTTCTTACTEST: gi|351036533|gb|FQ457246.1|FQ457246
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTTCT-ACTACTGGTTATTEST: gi|349827622|gb|FQ422490.1|FQ422490
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTT-CTTACTACTGGTTATT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTAEST: gi|351025469|gb|FQ435161.1|FQ435161
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTTGCACGCTTGAATTTGAAACACEST: gi|351025913|gb|FQ427925.1|FQ427925
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTT-GCACGCTTGAATTTGAGACAC
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAAAC-CGGCGTGCTTCTTACTACTGGTTATTEST: gi|351044016|gb|FQ431447.1|FQ431447
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTAEST: gi|352798342|gb|FQ480367.1|FQ480367
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGGTATTAEST: gi|351026266|gb|FQ428278.1|FQ428278
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTNACTACTGGGTATTAEST: gi|349823406|gb|FQ423217.1|FQ423217
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGAEST: gi|33404073|gb|CF209700.1|CF209700
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGA
EST: ACGATTACGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTAEST: gi|351025836|gb|FQ427848.1|FQ427848
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAAACACGGCEST: gi|349830206|gb|FQ420466.1|FQ420466
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGC
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGGTTAT-EST: gi|161715288|gb|FC064876.1|FC064876
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGG-TTATT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTAEST: gi|351036393|gb|FQ458768.1|FQ458768
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTEST: gi|351042077|gb|FQ456287.1|FQ456287
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTT
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTAEST: gi|351037820|gb|FQ464261.1|FQ464261
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
EST: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCA CTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
genomic: ACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccc ... tcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTA
ttaaattgaaatgtgacatttgtcatttatccatctctggttaaatcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTACATGTGTTGGGTCTTTACCATCCCTATGTGTGGGAGTACTCGCGGTTGA
ttaaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcctccatcggatgactatttccttacctgcatgtttttcttttaaattgaaatgtgacatttgtcatttatccatctctggttaaatcttgtgcagCTTTGCACGCTTGAATTTGAGACACGGCGTGCTTCTTACTACTGGTTATTACATGTGTTGGGTCTTTACCATCCCTATGTGTGGGAGTACTCGCGGTTGA
- -tcctcca
- - - - - - - - - - - - - - -cctgcat
- - - - - - - - - - - - - - - - - - - - - - - -aaattga