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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagtatttctatgcatgcttgtcattttgtctccatttgtattaactcgtagaattgcttctagtcctagaaacatgcagcaaatagtcatttgctattaccccatattcatttgtttcacttgtgaatggttgtcgccccaaccaaatatgactaagcatacattttgaaatttcagGTGCTCCATTCAAAAAATTTGCATCTATGCGGGATGAGTGGGCTCTCAAGAATCAATACATCAGTCCTG

Basic information

species Vitis vinifera
transcript Vv10s0116g00360.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00360.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G059151_T01 (Zea mays), 3'ss of exon 14
gtaagaagtatttctatgcatgcttgtcattttgtctccatttgtattaactcgtagaattgcttctagtcctagaaacatgcagcaaatagtcatttgctattaccccatattcatttgtttcacttgtgaatggttgtcgccccaaccaaatatgactaagcatacattttgaaatttcagGTGCTCCATTCAAAAAATTTGCATCTATGCGGGATGAGTGGGCTCTCAAGAATCAATACATCAGTCCTG
                                                                    ||   |  ||| |   |  |||  ||  |||  |||  |  ||  ||||      |  || | |||||||   | ||       || |     | | |        || || ||| ||| || ||||| |||| |||||| ||||| ||||||||||| ||||||||   ||||||||| ||||
--------------------------------------------------------------------gtatgatgaac-tctgg--aatgttcgcttg--atttactgatgatcatga----cgtttcttaatggttcatgtcctttttccatgtctgatatcctgtgacgccaatttccagCTGCACCTTTCAAGAAATATGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699977|gb|EE077493.1|EE077493
EST:     GTAAAGTTCA-GCCTGTGATCAAGAAG-CAATGGGTGAACTTGATG                         GTGCTCCATTC
genomic: GTAA-GTTCAAGCCTGTGATCAAGAAGGCAATGGTTGAACTTGATGgtaagaagta ... gaaatttcagGTGCTCCATTC
EST: gi|110419896|gb|EC986150.1|EC986150
EST:     GTAAGTTCAAGCCTGTGATCAAGAAGGCAATGGTTGAACTTGATG                         GTGCTCCATTCAAAAAATTTGCATCTATGCGGGATGAGTGGGCTCTCAAGA
genomic: GTAAGTTCAAGCCTGTGATCAAGAAGGCAATGGTTGAACTTGATGgtaagaagta ... gaaatttcagGTGCTCCATTCAAAAAATTTGCATCTATGCGGGATGAGTGGGCTCTCAAGA
EST: gi|77584856|gb|DV221506.1|DV221506
EST:     GTAAGTTCAAGCCTGTGATCAAGAAGGCAATGGTTGAACTTGATG                         GTGCTCCATTC
genomic: GTAAGTTCAAGCCTGTGATCAAGAAGGCAATGGTTGAACTTGATGgtaagaagta ... gaaatttcagGTGCTCCATTC
EST: gi|110720557|gb|EE096583.1|EE096583
EST:     GTAAGTTCAAGCCTGTGATCAAGAAGGCAATGGTTGAACTTGATG                         GTGCTCCATTCAAAAAATTTGCATCTATGCGGGATGAGTGGGCTCTCAAGA
genomic: GTAAGTTCAAGCCTGTGATCAAGAAGGCAATGGTTGAACTTGATGgtaagaagta ... gaaatttcagGTGCTCCATTCAAAAAATTTGCATCTATGCGGGATGAGTGGGCTCTCAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaatggttgtcgccccaaccaaatatgactaagcatacattttgaaatttcagGTGCTCCATTCAAAAAATTTGCATCTATGCGGGATGAGTGGGCTCTCAAGAATCAATACATCAGTCCTG
                                    atacattttgaaattt  TA-rich tract