Sequence
atgc intronic sequence ATGC exonic sequencegtaagattgaatatgttagcctgcagataaatttgcatatggaaacttcaactgaatttcaattacacaactgcagGAATGCGTCATGGCTGCTCTTGCTCATAAAACCGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCTGAAGTTGATAAAATTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G20770.1 (Glycine max), 3'ss of exon 3
-------------gtaagattgaat--atgttagcctgcagataaatttgcatatggaaacttcaactgaat---------ttcaattacacaactgcagGAATGCGTCATGGCTGCTCTTGCTCATAAAACCGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCTGAAGTTGATAAAATTCTG
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tattttaattaaaataccttttaattcattttttcttacaaaagaatttcttttaattaattttcagtgaatcaaacaacttacattttcatacttacagGACTGTGTAATGACGGCTCTAAGAGAAAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCAGAAGTTGATACAATCCTG
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G20360.1 (Glycine max), 3'ss of exon 2
------------------------gtaagattgaatatgttagcctgcagataaatt-tgcatatggaaacttcaactgaattt--caattacacaactgcagGAATGCGTCATGGCTGCTCTTGCTCATAAAACCGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCTGAAGTTGATAAAATTCTG
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gtaagaaaatatcaattatatcttgttaattacaataaaactgt-tgctctcaactcctaatttttgtgaattaaactaacttatgtatttacaaaattacagGACTGTGTCATGACTGCTCTAAGAGAGAAAACAGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCACAGAAGTTGATACAATCCTG
upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 4
---------------gtaagattgaatatgttagcctgcagataaatttgcatatggaaacttcaactgaatttcaattacacaactgcagGAATGCGTCATGGCTGCTCTTGCTCATAAAACCGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCTGAAGTTGATAAAATTCTG
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gtaacttgaaccacaatttgattctaaaaaacaatgaaaccattggatcatatactggaaactattctga-tttatgttatgcaattgcagGATTGTGTCAGGGTTGCTTTAAGAAGGAAAACAGTTATTCTTGTGACTCATCAAGTTGAATTTCTCTCAAAAGTTGATAAAATCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcagataaatttgcatatggaaacttcaactgaatttcaattacacaactgcagGAATGCGTCATGGCTGCTCTTGCTCATAAAACCGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCTGAAGTTGATAAAATTCTG
ataaatttgcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagattgaatatgttagcctgcagataaatttgcatatggaaacttcaactgaatttcaattacacaactgcagGAATGCGTCATGGCTGCTCTTGCTCATAAAACCGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCTCTGAAGTTGATAAAATTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG