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...gttcccacattggttctataatttgtcatttgtgcatggtattgaagctttgattaagtaaagccacatctcatgtcacttgaattgatatgaaatgcagGTTAAGGGAGCTTCACACATTGAAAGGGCATGTTGAGTCAGTGGTGAAGCTGAAGGGACTTGACATCGAGGGCATTCAACAGCACTACACTGTTTGAGTC
species | Vitis vinifera |
transcript | Vv09s0002g02260.t01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGTCTGAAATGGCTGAACAGGCCAAGAGGCGTGCTGAAGTTGCAAG GTTAAGGGAGCTTCACACATTGAAAGGGCATGTTGAGTCAGTGGTGAAGCTEST: gi|110382126|gb|EC938558.1|EC938558
genomic: GAGCTGTCTGAAATGGCTGAACAGGCCAAGAGGCGTGCTGAAGTTGCAAGgtaatgatca ... tgaaatgcagGTTAAGGGAGCTTCACACATTGAAAGGGCATGTTGAGTCAGTGGTGAAGCT
EST: GAGCTGTCTGAAATGGCTGAACAGGCCAAGAGGCGTGCTGAAGTTGCAAG GTTAAGGGAGCTTCACACATTGAAAGGGCATGTTGAGTCAGTGGTGAAGCT
genomic: GAGCTGTCTGAAATGGCTGAACAGGCCAAGAGGCGTGCTGAAGTTGCAAGgtaatgatca ... tgaaatgcagGTTAAGGGAGCTTCACACATTGAAAGGGCATGTTGAGTCAGTGGTGAAGCT
agctttgattaagtaaagccacatctcatgtcacttgaattgatatgaaatgcagGTTAAGGGAGCTTCACACATTGAAAGGGCATGTTGAGTCAGTGGTGAAGCTGAAGGGACTTGACATCGAGGGCATTCAACAGCACTACACTGTTTGAGTC
aattgat putative branch site (score: 4)
aattgatatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcccacattggttctataatttgtcatttgtgcatggtattgaagctttgattaagtaaagccacatctcatgtcacttgaattgatatgaaatgcagGTTAAGGGAGCTTCACACATTGAAAGGGCATGTTGAGTCAGTGGTGAAGCTGAAGGGACTTGACATCGAGGGCATTCAACAGCACTACACTGTTTGAGTC
-ttcccac
- - - - - - - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - tgaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtc