Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttttcctaattagaagtgtatatgtgaggaagtgacatacatttctgattttttatgcttgatgtttttagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTG

Basic information

species Vitis vinifera
transcript Vv05s0049g01840.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0049g01840.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G324540_T01 (Zea mays), 3'ss of exon 14
gtatgtgttttcctaattagaagtgtatatgtgaggaagtgacatacatttctgattttttatgctt--gatgtttt-tagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTG
||| ||  |||   |  || |||    || |||   || ||||| |  | | |  ||| | ||  ||       |||  ||||||| |||||||||||||||||||| |||||||| || ||||| || |||||  |||| ||  | || |||||||   | ||  |||| ||  |||
gtacgtaattt---agataaaagc---tacgtgcacaa-tgacaaatttatttagtttctaatatttccatcactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTG

upper sequence: Vv05s0049g01840.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GRMZM2G037698_T02 (Zea mays), 3'ss of exon 14
gtatgtgttttcctaattagaagtgtatatgtgaggaagtgacatacatttctgattttttatgcttgatgtttttagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTG
||||||  |||    |  ||   |||  |       ||||    |    |||| || ||||    |   |  ||  ||||||| |||||||||||||| ||||| |||||||| || ||||| || |||||  |||||||  | || ||||||||| ||||  |||||||  |||
gtatgtaatttagataaaagctatgtgcacagtgttaagtttgtttagcttctaatattttgccatcact--ttgcagACTGCTGCTCATGATGGTGTCAAGCTTTGGGATCTTCGGAAATTAAGAAATTTTAGGACCTTCTCTCCCTATGATTCAGATACGCCAACAAATACTG

upper sequence: Vv05s0049g01840.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AC205703.4_FGT004 (Zea mays), 3'ss of exon 4
gtatgtgttttcctaattagaagtgtatatgtgaggaagtgacatacatttctgattttttatgctt--gatgtttt-tagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTG
||| ||  |||   |  || |||    || |||   || ||||| |  | | |  ||| | ||  ||       |||  ||||| | |||||||||||||||||||| |||||||| || ||||| || |||||  |||| ||  | || |||||||   | ||  |||| ||  |||
gtacgtaattt---agataaaagc---tacgtgcacaa-tgacaaatttatttagtttctaatatttccatcactttacagACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTG

upper sequence: Vv05s0049g01840.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA10G26870.1 (Glycine max), 3'ss of exon 14
gtatgtgttttcctaattagaagtgtatatgtgaggaa-gtgacatacatttctgatt-ttttatgcttgatgtttttagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTG
|||||         |||   | | |||  | ||| ||  ||   ||||| |  |  |  || ||| ||| |  | |  ||||||| |||||||||||||||||||| ||||||||||| ||||||| ||| ||| |||  ||| | |||||||||||| | ||| | || | ||| |
gtatgcaagaa---aatgtaacgagtaagtatgatgattgttttatacagtatttttaattgtattcttaaattctacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCG

upper sequence: Vv05s0049g01840.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 14
--gtatgtgttttcctaattagaagtgtatatgtgaggaagtgacatacatttctgattttttatgcttgatgtttttagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTG
   | || |      ||| ||| |  ||||    || ||      ||||| |  |  | || ||  ||| |  ||   ||||||| |||||||||||||||||||| ||||||||||| ||| ||| ||| ||| |||  ||| | |||||||||||  | ||| |||| | ||| |
gtatgtgagaaaatgtaactagtaaagtat----gatgattgtttatacagtattcttattgtactcttaaatttgacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110422448|gb|EC988773.1|EC988773
EST:     TTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCG                         ACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAAT
genomic: TTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCGgtatgtgttt ... atgtttttagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAAT
EST: gi|37184349|gb|CF603703.1|CF603703
EST:     TTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCG                         ACTGCAGCTCATGATGGT
genomic: TTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCGgtatgtgttt ... atgtttttagACTGCAGCTCATGATGGT
EST: gi|77580118|gb|DV218951.1|DV218951
EST:     TTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCG                         ACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAAT
genomic: TTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCGgtatgtgttt ... atgtttttagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatatgtgaggaagtgacatacatttctgattttttatgcttgatgtttttagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTG
                                              tgttttt  CT-rich tract
                        atttctgattttttat  TA-rich tract