Sequence
atgc intronic sequence ATGC exonic sequence...tttatgatttgaggtgtttgggttagttatgtgtgtgaatgtcttatgttccctgcatatgaattcatgaaattgacctgatgaaaccctctcatgttagGTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA13G17950.1 (Glycine max), 3'ss of exon 14
-----tttatgatttgaggtgtttgggttagttatgtgtgtgaatgtcttatgttccctgcatatgaattcatgaaattgacctgatgaaaccctctcatgttagGTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAA
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aagacttcctactaacaaaaatttgcat--gctgcttgtctttctttttggttattttacgacatgtatt--tgctatttacttggtttacacgtct-gcattagGTGGGGTTTTCTATCTCGTGCTGGACTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAA
upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA17G04580.1 (Glycine max), 3'ss of exon 14
------tttatgatttgaggtgtttgggttagttatgtgtgtgaatgtcttatgttccctgcatatgaattcatgaaattgacctgatgaaaccctctcatgttagGTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAA
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ggactattcctactaacaaaaatttggat--gctgcttgtct---tgctttttggttattttatgacttgttttgctattaacttggtttacacgtct-gcattagGTGGGGTTTTCTATCTCGTGCTGGGCTGTGGGATAAAAGCCACTTGATGAGACAAATTGAGAA
upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA15G21240.1 (Glycine max), 3'ss of exon 13
--tttatgatttgaggtgtttgggttagttatgtgtgt-gaatgtcttatgttccctgcatatgaattcatgaaattgacctgatgaaaccctctcatgttagGTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAA
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tgttcatcatggcaaatcaacatatatgttatttgtcttgcatttcagttatttataccacatg--cctatggtattaacatgctgta-tctgcatacattagGTGGGGCTATCTATCGCGTGCTGGTTTGTGGGATAAAAGCCACTTGATGCGACAAATTGAGAA
upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 14
tttatgatttgaggtgtttgggttagttatgtgtgtgaatgt--cttatgttccctgcatatgaattcatg-aaattgacctgatgaaaccctctcatgttagGTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAA
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--------gtaaaaagaaaaagacaaacaaatgtagtaagattactcaagattcacagaaagggatatgtctgagccataattcttgggctgttttgc---agGTGGGGCTTCCTCTCACGCGCGGGTTTGTGGGATAAAAGCCACTTGATGAGACAAATCGAAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352773983|gb|FQ473115.1|FQ473115EST: GAAAAAATTGCACCAATGTTAGATGCTGATGGAGAGCACTTTAGCAAAAG GTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAG
genomic: GAAAAAATTGCACCAATGTTAGATGCTGATGGAGAGCACTTTAGCAAAAGgtaagagaag ... ctcatgttagGTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAG
EST:
gi|352772409|gb|FQ469934.1|FQ469934EST: GAAAAAATTGCACCAATGTTAGATGCTGATGGAGAGCACTTTAGCAAAAG GTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAG
genomic: GAAAAAATTGCACCAATGTTAGATGCTGATGGAGAGCACTTTAGCAAAAGgtaagagaag ... ctcatgttagGTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgttccctgcatatgaattcatgaaattgacctgatgaaaccctctcatgttagGTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAA
ccctctcat CT-rich tract
atatgaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttatgatttgaggtgtttgggttagttatgtgtgtgaatgtcttatgttccctgcatatgaattcatgaaattgacctgatgaaaccctctcatgttagGTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAA
- - - - - - - tgtttgg
- - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - gaatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccct