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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTAGCATGCTTGGTACAGTGGGCCCTCCAGTACCAAATGTTGACGTATGCCT

Basic information

species Vitis vinifera
transcript Vv02s0025g01410.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA11G02030.1 (Glycine max), 3'ss of exon 14
gtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTAGCATGCTTGGTACAGTGGGCCCTCCAGTACCAAATGTTGACGTATGCCT
                                                                      | |  ||||  ||  | |  | ||   || ||||     |  | |||||   | | || |||||     |  | || ||           || ||          |  | ||||  | ||   ||||||||||||||| |||||||| || ||||||||| | |||||||||||    |||||||| |||||||||||||| |||||||||| |||||| |||||
---------------------------------------------------------------------cactctaattctgt--gtatatatgcagaagatattatagacatcttttt---ggtccttgtactagatta--tggcctt----------gatgtg---------ctcctgttaaaatgaaaacagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAGAAATGCTTGGAACAGTGGGCCCTCCTGTACCAAATGGTGACGTGTGCCT

upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA01G43470.3 (Glycine max), 3'ss of exon 14
gtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTAGCATGCTTGGTACAGTGGGCCCTCCAGTACCAAATGTTGACGTATGCCT
                                                                                |  |   |   |    ||| |||||   ||  | || |   | | | ||    | |           | ||| ||  ||   |||    | |  ||  | ||||  | ||  |||||||||||||||| |||||||| || ||||||||| | |||||||||||    |||||||| |||||||||||||| ||||||||||| || || |||||
--------------------------------------------------------------------------------cactctaattct--gtaaatatatgcataagatattgtagacatctttatggttct---------tatactagattatggccttga---tgtgcttc-tgttaaaatgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAGAAATGCTTGGAACAGTGGGCCCTCCTGTACCAAATGTGGATGTTTGCCT

upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA05G36910.1 (Glycine max), 3'ss of exon 14
gtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcc-cgtttctagtactgtgcaaa-gtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTAGCATGCTTGGTACAGTGGGCCCTCCAGTACCAAATGTTGACGTATGCCT
                                                                                               |  || |   | |   |  ||| ||       |||||  |||||    || ||| | || |   || | ||       |  ||| | || |  ||||  ||||||| |||||||| ||||| || || ||||| ||| | ||||||||||    |||||||||||| ||||| ||||| |||||| |||| || ||  | ||
-----------------------------------------------------------------------------------------------gtcacttcaattctgtgcatttgtcaatagacctagtg-tgtgcttgtgttgctatttagagtatggacttattaacgtggttt-tgttcaaattaaaatagGTCTTACTGAAACCTGTGCTGGAACCTTTGTTTCATTACCAAATGAAAAGGACATGCTTGGTACGGTGGGGCCTCCTGTACCATATGTGGATGTGCGTCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349816864|gb|FQ399732.1|FQ399732
EST:     GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATG                         GTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTA
genomic: GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtc ... gttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTA
EST: gi|351053855|gb|FQ441621.1|FQ441621
EST:     GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATG                         GTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTA
genomic: GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtc ... gttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTA
EST: gi|351028751|gb|FQ433181.1|FQ433181
EST:     GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATG                         GTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAATTTA
genomic: GGAAGCTTATCTACGAGTGGTGACTTGTGCTCATGTTCTACAAGGATATGgtatgcagtc ... gttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTAGCATGCTTGGTACAGTGGGCCCTCCAGTACCAAATGTTGACGTATGCCT
                          atctttattttgtatt  TA-rich tract