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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttgtagatagtgtcgatgtcattatgaaatctggatcatttgtgttaatcgtacgttacttatttgtccttgcattacatttatttgcagGGTGCAGTCTGTCTAGCTCGCAGCATGAAAGTTGTTAATGAGGCTTTAGCTTCACTTGATTTAGGGTTTAATGAAATAAGA

Basic information

species Vitis vinifera
transcript Vv01s0026g00610.t01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA01G04270.1 (Glycine max), 3'ss of exon 11
gtaagtt-cttgtagatagtgtcgatgtcattatgaaatctggatcatttgtgttaatcgtacgttacttatttgtccttgcattac--atttat--ttgcagGGTGCAGTCTGTCTAGCTCGCAGCATGAAAGTTGTTAATGAGGCTTTAGCTTCACTTGATTTAGGGTTTAATGAAATAAGA
||  |||    |||  | | ||| || | |   |  ||||    |      | || |||   |  |  |    |||  |||  |||   ||  |   ||||||||||||    | || ||||||||| ||||||| |||||||| |||||| | || || |||||||| |||||||||||||| 
gtttgttatccgtaccttgagtc-attttaccctttaatcattttttcaaatcttcatcagtcaatcttaggatgttattgttttatgaatcaactattgcagGGTGCACAGAGCCTGGCTCGCAGCTTGAAAGTGGTTAATGAAGCTTTAACCTCTCTAGATTTAGGATTTAATGAAATAAGG

upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 14
lower sequence: GLYMA02G03410.1 (Glycine max), 3'ss of exon 13
-------gtaagttcttgtagatagtgt-cgatgtcattatgaaatctggatcatttgtgttaatcgtacgttacttatttgtccttgcattacatttatttgcagGGTGCAGTCTGTCTAGCTCGCAGCATGAAAGTTGTTAATGAGGCTTTAGCTTCACTTGATTTAGGGTTTAATGAAATAAGA
        | ||| | |  ||  | | | |  | | || ||    ||         |  || |||| || | | ||||||  |   || ||  ||  |||| |||||||||     | || ||||||||| ||||||| |||||||| |||||| | || || || ||||| |||||||||||||| 
gtttgttatcagtaccttgagtcattttaccctttaatcattttttcaaatcttcatcagtcaatcttaggat-cttattgttttatgaat--caactatt-gcagGGTGCTCAGAGCCTGGCTCGCAGCTTGAAAGTGGTTAATGAAGCTTTAACCTCTCTAGACTTAGGATTTAATGAAATAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttgtgttaatcgtacgttacttatttgtccttgcattacatttatttgcagGGTGCAGTCTGTCTAGCTCGCAGCATGAAAGTTGTTAATGAGGCTTTAGCTTCACTTGATTTAGGGTTTAATGAAATAAGA
       tgttaat  putative branch site (score: 3)
                                            tttattt  putative PPT
                                      attacatttattt  TA-rich tract