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gtatgattggaaaagataactacttgcttttcaaccgtccttgattagtctggtcttattcttttcctaaggtactatccttggtttttaacaacttgttttctttctgaatcattctattgcagGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGGACTATGAAGACAAAAAATTCCAGAATGTGTCAAAGGAAGGCCTGAAAC
species | Vitis vinifera |
transcript | Vv18s0001g14500.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATTGGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAG GTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGEST: gi|33410302|gb|CF215929.1|CF215929
genomic: ATT-GGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAGgtatgattgg ... tctattgcagGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATG
EST: AATTGGAGAAGTCTCCATTCCTCGAGAGGCTTACAAAGAAGAATTATGAG GTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGEST: gi|161715138|gb|FC064271.1|FC064271
genomic: AATTGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAGgtatgattgg ... tctattgcagGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATG
EST: AATTGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAG GTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGEST: gi|22008983|gb|BQ794017.1|BQ794017
genomic: AATTGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAGgtatgattgg ... tctattgcagGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATG
EST: AATTGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAG GTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGEST: gi|110719823|gb|EE095290.1|EE095290
genomic: AATTGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAGgtatgattgg ... tctattgcagGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATG
EST: AATTGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAG GTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGEST: gi|294966850|gb|GW839725.1|GW839725
genomic: AATTGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAGgtatgattgg ... tctattgcagGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATG
EST: GGCTTACAAAGAAGAATTATGAG GTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATG
genomic: GGCTTACAAAGAAGAATTATGAGgtatgattgg ... tctattgcagGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATG
ggtactatccttggtttttaacaacttgttttctttctgaatcattctattgcagGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGGACTATGAAGACAAAAAATTCCAGAATGTGTCAAAGGAAGGCCTGAAAC
ttttaac putative branch site (score: 2)
tcattct putative PPT
tttttaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattggaaaagataactacttgcttttcaaccgtccttgattagtctggtcttattcttttcctaaggtactatccttggtttttaacaacttgttttctttctgaatcattctattgcagGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGGACTATGAAGACAAAAAATTCCAGAATGTGTCAAAGGAAGGCCTGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA