1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...aaaatacaaaaatatctgaaagttcactatctgtgttcagaactgagcctgaagaattgcacacaacttatggtacttctttttttttccttccttggagGTTTTGGTGCATGGATCAGCAGAGGCGACCGAGCATTTGAAGCAACACTGCTTGAAACATGTTTGTCCCCATGTTTATGCTCCCCAAATTGGAGAAACAA
species | Vitis vinifera |
transcript | Vv16s0050g00590.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGGCCGCTCAATTAAGTCCATTCTTTCTCATGTGGCTCCACTAAAGCTT GTTTTGGTGCATGGATCAGCAGAGGCGACCGAGCATTTGAAGCAACACTGCEST: gi|37188854|gb|CF608203.1|CF608203
genomic: ATGGCCGCTCAATTAAGTCCATTCTTTCTCATGTGGCTCCACTAAAGCTTgtatggaagt ... ttccttggagGTTTTGGTGCATGGATCAGCAGAGGCGACCGAGCATTTGAAGCAACACTGC
EST: ATGGCCGCTCAATTAAGTCCATTCTTTCTCATGTGGCTCCACTAAAGCTT GTTTTGGTGCATGGATCAGCAGAGGCGACCGAGCATTTGAAGCAACACTGC
genomic: ATGGCCGCTCAATTAAGTCCATTCTTTCTCATGTGGCTCCACTAAAGCTTgtatggaagt ... ttccttggagGTTTTGGTGCATGGATCAGCAGAGGCGACCGAGCATTTGAAGCAACACTGC
agcctgaagaattgcacacaacttatggtacttctttttttttccttccttggagGTTTTGGTGCATGGATCAGCAGAGGCGACCGAGCATTTGAAGCAACACTGCTTGAAACATGTTTGTCCCCATGTTTATGCTCCCCAAATTGGAGAAACAA
cttatggtacttcttt CT-rich tract
tacttcttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatacaaaaatatctgaaagttcactatctgtgttcagaactgagcctgaagaattgcacacaacttatggtacttctttttttttccttccttggagGTTTTGGTGCATGGATCAGCAGAGGCGACCGAGCATTTGAAGCAACACTGCTTGAAACATGTTTGTCCCCATGTTTATGCTCCCCAAATTGGAGAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
aaaatac
- - - -aaaaata
- - - - - - - - - - - - - - - -tgtgttc
- - - - - - - - - - - - - - - - - - - - - - -agcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttatgg