1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tcattttaggatcctcaaatgatattattacatgtataacattgcctcaggaatctgaaggttatcgtttatgtgcactgacgtattacttctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGTCATATGGACAACGTTATCAAGGGTTTACAATTCCAGAGGCTTATGAAC
species | Vitis vinifera |
transcript | Vv14s0171g00490.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CGCCTCCAACCCTTATGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|110716825|gb|EE092144.1|EE092144
genomic: CGCCTCCAACCTTTA-GAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|351015046|gb|FQ444335.1|FQ444335
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTCAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|352773448|gb|FQ472230.1|FQ472230
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|110365367|gb|EC928242.1|EC928242
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTCAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|110715492|gb|EE093605.1|EE093605
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|33405782|gb|CF211409.1|CF211409
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|110361886|gb|EC925389.1|EC925389
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTCAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|110696408|gb|EE072500.1|EE072500
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTCAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|110390234|gb|EC955134.1|EC955134
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTCAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|352763934|gb|FQ465384.1|FQ465384
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|352777620|gb|FQ466673.1|FQ466673
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACTTGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|352781379|gb|FQ468223.1|FQ468223
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: ATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|56409520|gb|CX017772.1|CX017772
genomic: ATTTGTAATACGCCTCCAACCTTTAGAGGCCA-TTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTEST: gi|352781474|gb|FQ468318.1|FQ468318
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACT
EST: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|110416304|gb|EC982275.1|EC982275
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGEST: gi|110373098|gb|EC937308.1|EC937308
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
EST: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACG GTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
genomic: AATTTGTAATACGCCTCCAACCTTTAGAGGCCATTTACATGAAGCTTACGgtgcgttact ... tctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTG
ctcaggaatctgaaggttatcgtttatgtgcactgacgtattacttctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGTCATATGGACAACGTTATCAAGGGTTTACAATTCCAGAGGCTTATGAAC
cactgac putative branch site (score: 2)
ttacttctc putative PPT
tattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattttaggatcctcaaatgatattattacatgtataacattgcctcaggaatctgaaggttatcgtttatgtgcactgacgtattacttctcatgcagGTCAAGCAGCCTGGGCTTGAAATGTCAACTGTACAAAGCGAACTAGACTTGTCATATGGACAACGTTATCAAGGGTTTACAATTCCAGAGGCTTATGAAC
- - - - - - cctcaaa
- - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc