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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttgattaaaccatgacttactgactttaccctgttcattcatagttcatattgccctcttatttgaccatgttgttgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATGTAGGTCGGGCTCAACAGATACATCTCACAGATACCCTAAACCAATGCCT

Basic information

species Vitis vinifera
transcript Vv13s0019g05250.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05250.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA10G34150.2 (Glycine max), 3'ss of exon 13
gtaaatttgattaaaccatgacttactgactttaccc----tgttcattcatag-----ttcatattg----ccctcttatttgac---catgttgttgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATGTAGGTCGGGCTCAACAGATACATCTCACAG-ATACCCTAAACCAATGCCT
|||||  | ||| |     |  ||  |   |||  |     |||| |||  | |     |||||  ||    |  | | || |||     || |  |    | |||||| |||||| | |||||||||||||  || || ||||| ||||||||||||||    |     | |   |  ||  || || | |   | ||  |   || 
gtaaacatcattcattatgggttttttttttttgacaaaaatgttaattgtttgatatattcatgatgttaactgtatcatctgaaacatatatactctggtgtcagGGAATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCTGGAGAAATGTAACAAGCCTAAATCTCCTGAATACCAAAGCAGATATTGAAATAGGTCC-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550508|gb|CF518726.1|CF518726
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|34550427|gb|CF518645.1|CF518645
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACANGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGA
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGA
EST: gi|110725848|gb|EE102783.1|EE102783
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|110429818|gb|EC996325.1|EC996325
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|18459084|gb|BM437351.1|BM437351
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|351040604|gb|FQ438148.1|FQ438148
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|110381192|gb|EC946513.1|EC946513
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|28963316|gb|CB342349.1|CB342349
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACGATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|33402579|gb|CF208206.1|CF208206
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|110367124|gb|EC931047.1|EC931047
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|110392317|gb|EC957652.1|EC957652
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGA
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGA
EST: gi|351046814|gb|FQ454424.1|FQ454424
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|349811478|gb|FQ409474.1|FQ409474
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAAGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|110423097|gb|EC989434.1|EC989434
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|32245213|gb|CD711032.1|CD711032
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|18458671|gb|BM436949.1|BM436949
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|110393853|gb|EC959389.1|EC959389
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG
EST: gi|29785366|gb|CB342287.2|CB342287
EST:     AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAG                         GGTATTGCTTTCTGTGATCTACCTGAGGACACGATGCTCCCTGGAGATCTN
genomic: AAGCTGAGTTGCTTGCTGAAAAGAGATGTGTGGCCCATCTTACAGGGGAGgtaaatttga ... tgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttcattcatagttcatattgccctcttatttgaccatgttgttgtctttcagGGTATTGCTTTCTGTGATCTACCTGAGGACACAATGCTTCCTGGAGAAATGTAGGTCGGGCTCAACAGATACATCTCACAGATACCCTAAACCAATGCCT
                              atttgac  putative branch site (score: 4)
                                            ttgtctttc  putative PPT
              ttcatatt  TA-rich tract