1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtattcttcttaactagttcttataattgatagagcagctagcattcgcatgtatgtttacagtatgtaataatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCTTATAG
species | Vitis vinifera |
transcript | Vv11s0052g01710.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCA GTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCTEST: gi|351032492|gb|FQ458857.1|FQ458857
genomic: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCAgtattcttct ... aatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCT
EST: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCA GTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCTEST: gi|349809734|gb|FQ398359.1|FQ398359
genomic: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCAgtattcttct ... aatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCT
EST: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCA GTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCTEST: gi|349811710|gb|FQ409707.1|FQ409707
genomic: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCAgtattcttct ... aatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCT
EST: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCA GTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCTEST: gi|349812955|gb|FQ411195.1|FQ411195
genomic: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCAgtattcttct ... aatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCT
EST: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCA GTATGACTGGGATGCTGCAACCACCGCTAATTTCTTGCGAAAATATGGTCTEST: gi|351032512|gb|FQ458877.1|FQ458877
genomic: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCAgtattcttct ... aatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCT
EST: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCA GTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCTEST: gi|352786892|gb|FQ481267.1|FQ481267
genomic: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCAgtattcttct ... aatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCT
EST: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCA GTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCTEST: gi|349820047|gb|FQ404769.1|FQ404769
genomic: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCAgtattcttct ... aatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCT
EST: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCA GTATGACTGGGATGCTGCAACCACCGCTAATTTCTTGCGAAAATATGGTCT
genomic: GGACTCTTTTGATTGAACCCAAGCCTCAAGAACCTACAAAACACCAgtattcttct ... aatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCT
ttgatagagcagctagcattcgcatgtatgtttacagtatgtaataatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCTTATAG
aattgat putative branch site (score: 4)
tatgtaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcttcttaactagttcttataattgatagagcagctagcattcgcatgtatgtttacagtatgtaataatgtggcagGTATGACTGGGATGCTGCAACCACCGCTAATTTCTTACGAAAATATGGTCTTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC