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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgcaaaaccatttagtatcatagatcatttacaaatttgatttgctaatttttttttcccttctgctggttgcaaacagGTTGATGTATTTGGTTCCATTGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACGATTCGTGACAACATTCTCTACGGAAAACCAATGGATACAA

Basic information

species Vitis vinifera
transcript Vv09s0002g02430.t01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 3
-------------------------------------gtgagttgcaaaaccatttagtatcatagatcatttacaaatt--tgatttgctaatttttttttcccttctgctggttgcaaacagGTTGATGTATTTGGTTCCATTGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACGATTCGTGACAACATTCTCTACGGAAAACCAATGGATACAA
                                      | |      || | | ||||||   |  || | |   ||| |  | ||||  |  | |||||| | ||| ||    | | |||||||||  ||||| |||  |  ||||||| ||||| |||||| |||||||||||||||| || |||||||| || |||||||| |||||||||||||||  ||
gtgagttattgatcatccaaatttagtatattataacattaaacatgaagcaacttagtaattttaatgactattaaactctttatttatttttcttttttgctcttgtgaaaatggaaaacagGTTAGTGTATGTGGAACACTTGCCTACGTTTCCCAAACTCCTTGGATCCAAAGTGGTACAATTCGTGATAATATTCTCTATGGAAAACCAATGGATGAAA

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G20360.1 (Glycine max), 3'ss of exon 1
gtgagttgcaaaaccatttagtatcatagatcat--ttacaaatttgatttgctaatttttttttc----ccttctgctggttgcaaacagGTTGATGTATTTGGTTCCATTGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACGATTCGTGACAACATTCTCTACGGAAAACCAATGGATACAA
|||||||   || |     ||| |  |   |  |  |  ||||||    ||  || |||| |  |       |  || |  | | ||||||||  |||||  |||  | || |||||||||||||||||||||||||| |||||||||||  |||| || || || |||| |||||| |||||||| | ||
gtgagttattaaccatacaagtttagttttttgtcatgccaaattcatatttatatttttgtccttgatatttcatgataatggtaaacagGTGAATGTAGGTGGCACAATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGGGATAATATACTCTTCGGAAAGCCAATGGACAAAA

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 1
gtgagttg-----caaaaccatttagt-----atcat----agatca--tttacaaatttgatttgcta-atttttttttccct-----tctgc--tggttgcaaacagGTTGATGTATTTGGTTCCATTGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACGATTCGTGACAACATTCTCTACGGAAAACCAATGGATACAA
|||||||      ||||    ||||||      ||||    |  |||  |||| ||   |  | |   | | |||||| |||||     | | |  |   || ||||||||| |||| | |||  |  | |||||||||||||||||||||||||| |||||||||||  |||| || || || ||||  ||||| |||||||| | ||
gtgagttattaaccaaacaagtttagttttttgtcatgtcaaattcatgtttataatccttgtgtctaacacttttttgtccctgaaattttacaataactgaaaacagGTTAATGTGTCTGGCACTGTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGAGATAATATACTCTTTGGAAAGCCAATGGACAAAA

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G20770.2 (Glycine max), 3'ss of exon 1
gtgagttg-----caaaaccatttagt----atcatagatcatttacaaatttgat-ttgctaat------ttttttttccct---tctgc----tggttgcaaacagGTTGATGTATTTGGTTCCATTGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACGATTCGTGACAACATTCTCTACGGAAAACCAATGGATACAA
|||||||      |||||   | ||||     ||||     ||| |    | | || |||||||       |||||  |||||   ||| |    |  | | ||||||||| |||| | |||  |||| |||||||||||||||||||||||||| ||| |||||||  |||  || || || |||| ||| || |||||||| | ||
gtgagttactaaccaaaagactctagtttttgtcatgtcaaattcatgtttctaatcttgctaactaacactttttcctccctgaatcttcacaataatggaaaacagGTTAATGTGTGTGGCACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAGGTGGGACAGTTCAAGATAATATACTCTTCGGCAAGCCAATGGACAAAA

upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT3G21250.2 (Arabidopsis thaliana), 3'ss of exon 2
--------gtgagttgc-aaaacca--tttagtatcatagatcatttacaaatttgatt--tgctaatttttttttcccttctgctggttgcaaacagGTTGATGTATTTGGTTCCATTGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACGATTCGTGACAACATTCTCTACGGAAAACCAATGGATACAA
         | ||   | || ||    |||    |  |  || |  || | ||||| ||  | | ||| |||  ||  | |   |   ||| ||||||||  | || ||||| ||||| || ||||||||||| |||||||||||||||||||| || || || ||||| || ||||| ||||| || ||||| |  |
gtaagcaaatcagccaccaagactgactttcacttttttcattagatatacatttgtttgttccaaatgtttcctttacgttgtccaattg-aaacagGTAAAGGTCTTTGGGTCCATCGCTTATGTTTCTCAGACTTCTTGGATCCAAAGTGGTACCATCCGGGACAATATCCTCTATGGAAAGCCCATGGAAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttacaaatttgatttgctaatttttttttcccttctgctggttgcaaacagGTTGATGTATTTGGTTCCATTGCCTATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACGATTCGTGACAACATTCTCTACGGAAAACCAATGGATACAA
                  tgctaat  putative branch site (score: 2)
                        tttttttttcccttct  CT-rich tract
     tacaaatttgatttgc  TA-rich tract