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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccatacctacatcaatgacatatgaaaaagaaaaaagaaaaaagaaaaaagggttttgcagtatggttaattgatcctttttcttgtactgaacaatccagACTGCCTTCACAACAAAGAAGGATTATGGAAGAGGAGAGAGGGAGGCACAATGGGCTTTGGCTCAGCGCACACTGCATGGCCTCCAGCCTCCACAGACAT

Basic information

species Vitis vinifera
transcript Vv09s0002g02260.t01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383543|gb|EC947921.1|EC947921
EST:     TTCGGTATGCATTGACTGGCAAGGCCTGGGACACACTCCTCCAGAATAAG                         ACTGCCTTCACAACAAAGAAGGATTATGGAAGAGGAGAGAGGGAGGCACAA
genomic: TTCGGTATGCATTGACTGGCAAGGCCTGGGACACACTCCTCCAGAATAAGgtaccatacc ... aacaatccagACTGCCTTCACAACAAAGAAGGATTATGGAAGAGGAGAGAGGGAGGCACAA
EST: gi|110382126|gb|EC938558.1|EC938558
EST:     TTCGGTATGCATTGACTGGCAAGGCCTGGGACACACTCCTCCAGAATAAG                         ACTGCCTTCACAACAAAGAAGGATTATGGAAGAGGAGAGAGGGAGGCACAA
genomic: TTCGGTATGCATTGACTGGCAAGGCCTGGGACACACTCCTCCAGAATAAGgtaccatacc ... aacaatccagACTGCCTTCACAACAAAGAAGGATTATGGAAGAGGAGAGAGGGAGGCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagggttttgcagtatggttaattgatcctttttcttgtactgaacaatccagACTGCCTTCACAACAAAGAAGGATTATGGAAGAGGAGAGAGGGAGGCACAATGGGCTTTGGCTCAGCGCACACTGCATGGCCTCCAGCCTCCACAGACAT
                      aattgat  putative branch site (score: 4)
                    ttaattgat  TA-rich tract