1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgtgttttgtttcactgaaagtgttaatctgtcaaattgaatctgaatttgcaagaatccttgacttgtccccaatttctaatgatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATGTGTTGTGGAGCAGACATGTTCTCTGTTCCTTCCAGAAAGCAAGTTGTCC
species | Vitis vinifera |
transcript | Vv07s0104g01480.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTG GCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATGEST: gi|110370590|gb|EC930089.1|EC930089
genomic: TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTGgtgtgttttg ... gatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
EST: TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTG GCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATGEST: gi|22015285|gb|BQ800319.1|BQ800319
genomic: TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTGgtgtgttttg ... gatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
EST: GGAGGAATGCAGAGCATCTTCTG GCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATGEST: gi|110390735|gb|EC955661.1|EC955661
genomic: GGAGGAATGCAGAGCATCTTCTGgtgtgttttg ... gatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
EST: TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTG GCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
genomic: TTGCTGGCAGTTGGTTTGAGCGGCACAGGAGGAATGCAGAGCATCTTCTGgtgtgttttg ... gatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATG
gaatctgaatttgcaagaatccttgacttgtccccaatttctaatgatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATGTGTTGTGGAGCAGACATGTTCTCTGTTCCTTCCAGAAAGCAAGTTGTCC
ttctaat putative branch site (score: 2)
aatttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttttgtttcactgaaagtgttaatctgtcaaattgaatctgaatttgcaagaatccttgacttgtccccaatttctaatgatggtacagGCCGTTTTTGAGACGAGATTGAAAGATATGGCTATGGCAGTACCTCTGATGTGTTGTGGAGCAGACATGTTCTCTGTTCCTTCCAGAAAGCAAGTTGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG