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...cactagaaagtggattgatccaattcaaaaattcttgttgatgtattcttttgggttttttcagcatctcactactaactaccgtttgtttgtgttatagACCCGAGGTTGGTGGGATATCCTAGAACAAGAGGAGAAATCTAAT
species | Vitis vinifera |
transcript | Vv07s0031g01540.t01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATCACGAGCAAAATGAAGTTGTTTATACTGGGACTCATGACAATGACACA ACCCGAGGTTGGTGGGATATCCTAGAACAAGAGGAGAAATCTAATEST: gi|110699123|gb|EE075856.1|EE075856
genomic: ATCACGAGCAAAATGAAGTTGTTTATACTGGGACTCATGACAATGACACAgtaaaaatct ... tgtgttatagACCCGAGGTTGGTGGGATATCCTAGAACAAGAGGAGAAATCTAAT
EST: ATCACGAGCAAAATGAAGTTGTTTATACTGGGACTCATGACAATGACACA ACCCGAGGTTGGTGGGATATCCTAGAACAAGAGGAGAAATCTAATEST: gi|34544532|gb|CF512764.1|CF512764
genomic: ATCACGAGCAAAATGAAGTTGTTTATACTGGGACTCATGACAATGACACAgtaaaaatct ... tgtgttatagACCCGAGGTTGGTGGGATATCCTAGAACAAGAGGAGAAATCTAAT
EST: ATCACGAGCAAAATGAAGTTGTTTATACTGGGACTCATGACAATGACACA ACCCGAGGTTGGTGGGATATCCTAGAACAAGAGGAGAAATCTAAT
genomic: ATCACGAGCAAAATGAAGTTGTTTATACTGGGACTCATGACAATGACACAgtaaaaatct ... tgtgttatagACCCGAGGTTGGTGGGATATCCTAGAACAAGAGGAGAAATCTAAT
ttcttttgggttttttcagcatctcactactaactaccgtttgtttgtgttatagACCCGAGGTTGGTGGGATATCCTAGAACAAGAGGAGAAATCTAAT
tactaac putative branch site (score: 0)
tttgttt putative PPT
ttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactagaaagtggattgatccaattcaaaaattcttgttgatgtattcttttgggttttttcagcatctcactactaactaccgtttgtttgtgttatagACCCGAGGTTGGTGGGATATCCTAGAACAAGAGGAGAAATCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - tggattg
- - - - - - - - - - - - -caaaaat
- - - - - - - - - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcacta