Sequence
atgc intronic sequence ATGC exonic sequencegtatgaaaagattatgaagatatatggtaactttttggacagttgacttgtaaattgatctgattacatgcagATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: 13114.m00153 (Oryza sativa), 3'ss of exon 16
gtatgaaaagattatgaagatatatggtaactttttggacagttgacttgtaaattgatctgattaca-tgcagATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATG
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--gtaaacttctcatcttgccg-atgcttattttcttaaaatataaca-ataatttgtgcttgctccactccagATGGTCTGCCATCACCTCGATAGAAATATCCCAGAAGATGTAGCATTTGCCGAGTCTAGAATTCGAGCTGAAACAATAGCTGCTGAGGATATCTTGCATG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GRMZM2G461569_T01 (Zea mays), 3'ss of exon 13
gtatgaaaagattatgaagatatatggtaactttttggacagttgac-ttgtaaattgatctgattaca-tgcagATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATG
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gtatgcaattatccaattcagcactgtagatacagtgtacaattttcatggtaatatgttgtgattatagtgcagATGGTTTGTCACCACCTTGATAAAAACATTCCAGAAGATGTAGCATTTGCCGAGTCTAGAATTCGAGCTGAAACAATTGCTGCTGAGGACATATTGCATG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA11G37250.1 (Glycine max), 3'ss of exon 14
gtatgaaa-agattatgaagata-tatggtaactttttggacagttgacttgtaaattgatctg--attacatgcagATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATG
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gtatgcaacaaatcacaaaagtaatagtgtacagcttgtgctatttggctcttaatttgcgctcgtatgatgtacagATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCTGAATCAAGAATAAGAGCTGAAACAATTGCTGCTGAAGATATTTTACATG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA08G10850.1 (Glycine max), 3'ss of exon 15
----------------gtatgaaaagattatgaagatatatggtaactttttggacagttgacttgtaaattgatctgattacatgcagATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATG
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gtaagatataattctggtaggaggtagtaatgatg-tacattgtgatgacatgtggtgttctcaatttagtctttctg-tgacatgcagATGGTCTGCCATCATCTGAATAGGGAAATTCCAGAAGACTTAGCTTTTGCATGTTCAAGGATAAGAGAGGGAACAATTGCTGCTGAAGATATTTTGCATG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA05G27840.1 (Glycine max), 3'ss of exon 13
---gtatgaaaagattatgaagatat--atggta-actttttg--gacagttgacttgtaaattgatctgatta---catgcagATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATG
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gtaagatataaatctggtaaaggtagtaatgatgtgcattgtgatgacatgtggttctcaatttagactttctgtggcatgcagATGGTCTGCCATCATCTGAATAGGGAAATTCCAGAAGACTTAGCTTTTGCATGTTCAAGGATAAGAGAAGGAACGATTGCTGCCGAAGATATTTTGCATG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 3'ss of exon 13
gtatgaaaagattatgaagatatatggtaactttttggacagttgacttgtaaattg------atctgattacatgcagATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATG
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gtatgagaattttatacgagtg-atggtgaattgctttacttttgtcttgttaataacctcatatgcaaacacaaacagATGGTTTGCCATCACCTTGACAAGAACATCCCAGAAGATGTAGCTTTTGCTGAATCAAGAATAAGAGCTGAAACAATAGCTGCAGAGGATATATTGCATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688779|gb|EC925600.1|EC925600EST: CTTCCAATACCATAGATGAGCACCTTGACATGCTG ATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCT
genomic: CTTCCAATACCATAGATGAGCACCTTGACATGCTGgtatgaaaag ... ttacatgcagATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatatatggtaactttttggacagttgacttgtaaattgatctgattacatgcagATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATG
taacttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaaaagattatgaagatatatggtaactttttggacagttgacttgtaaattgatctgattacatgcagATGGTCTGCCATCACCTTGATAAGGATATTCCAGAAGATGTAGCCTTTGCTGAATCACGAATAAGAGCTGAAACAATTGCTGCTGAAGACATTTTGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA