Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcataaattatatttctttgtctattttggtgttcatattttgatctttctaagctgttttaaggttgtgctattggtatatttaaaatatttagaaaagaagaaagacctcaagtcttgctggttgtttgacagGACGCAACTTGTCAATGCTTCCGGTTGAGCCCAAACTTGGGAAAATGCTCATATTTGGTTCTCTTTTCAACTGTCTGAATCCAATAATGACTGTTGTTGC

Basic information

species Vitis vinifera
transcript Vv17s0000g03030.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g03030.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA05G34180.1 (Glycine max), 3'ss of exon 13
--------------gtg-cataaattatatttct-ttgtctattttggtgttcatattttgatctttcta--agctgttttaaggttgtgctattggtatatttaaaatatttagaaaagaagaaagacctcaagtcttgctggttgtttgacagGACGCAACTTGTCAATGCTTCCGGTTGAGCCCAAACTTGGGAAAATGCTCATATTTGGTTCTCTTTTCAACTGTCTGAATCCAATAATGACTGTTGTTGC
              |   |||    | ||||||| ||| |  ||||  ||   | | |||  ||||   |   | | ||  |||  | |   ||   |   ||| |  | ||    |   |     ||  |  |         |||  ||  |||| | ||| ||| |||||||||| || |||||||||||||| || |||||||| || ||  || | ||||| ||| || |||| ||||||||| |||||||
gtaaaacaactactgcatcatggtctctatttctcttgccattttttatgaaaacaattttctcttgtcattggtttttccaagcctttataatgtattattttgatttgttccagagctactgctgatattgaaat------gttaattttcagGGCACAAATTGGCAATGCTTCCTGTGGAGCCCAAACTTGGCAAGATGCTCATTTTGGGAGCTATCTTCAAGTGTTTGGATCCCATAATGACTATTGTTGC

upper sequence: Vv17s0000g03030.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G48650.2 (Arabidopsis thaliana), 3'ss of exon 13
gtgcataaattatatttctttgtctattttggtgttcatattttgatctttctaagctgttttaaggttgtgctattggtatatttaaaatatttagaaaagaagaaagacctcaagtcttgctggttgtttgacagGACGCAACTTGTCAATGCTTCCGGTTGAGCCCAAACTTGGGAAAATGCTCATATTTGGTTCTCTTTTCAACTGTCTGAATCCAATAATGACTGTTGTTGC
                                          |   | | | |  |   ||||   ||| |  ||    | | |||      | |  |      | | || ||||     ||||   ||     ||||    ||  ||||||||||||| || ||||| |||||||| |||||||| || || ||  || | |||||||||||  ||||| ||||||| ||||||||
-----------------------------------------gtgtgtttctatgggagatttttctgttatcttaaatatctgttt------tctcaagttctggcaggaactcataatatgctctatg-----cagGGAAAAATCTGTCAATGCTTCCTGTGGAGCCTAAACTTGGAAAAATGCTTATTTTAGGGGCTATCTTCAACTGTCTAGATCCAGTAATGACAGTTGTTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaaaatatttagaaaagaagaaagacctcaagtcttgctggttgtttgacagGACGCAACTTGTCAATGCTTCCGGTTGAGCCCAAACTTGGGAAAATGCTCATATTTGGTTCTCTTTTCAACTGTCTGAATCCAATAATGACTGTTGTTGC
     aaatatttagaaaaga  TA-rich tract