Sequence
atgc intronic sequence ATGC exonic sequence...taaactaatgatcatgaaggtgttagtatattggtgttttgtttgttttttttttgtttttttttgttttaatgaaatcttatcttgttcattccttcagATCACAGGGATACGATTTATGTGGGAAAATATTATCCAGTCCATTAGAAAAGTGAAATCTGGTGATAAAGGTCTTGGTTGCATTCTAGCTCACACCATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0036g01460.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os10g31970.1 (Oryza sativa), 3'ss of exon 13
-taaactaatgatcatgaaggtgttagtatattggtgttttgtttgttttttttttgtttttttttgttttaatgaaatcttatcttgttcattccttcagATCACAGGGATACGATTTATGTGGGAAAATATTATCCAGTCCATTAGAAAAGTGAAATCTGGTGATAAAGGTCTTGGTTGCATTCTAGCTCACACCATGG
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gttcatgtgccagtatcgcatcaccatcacactggt-catgatttctgtacagttgtacctatactgttacaggaagctaaaatatatcatgatatttcagGTATCAGGAATAAGATTTATGTGGGAAAATGTGATCCAATCTGTCAAGAAGGTCAAATCTGGGGATAAAGGTTTTGGTTGCATTTTGGCTCACAACATGG
upper sequence: Vv14s0036g01460.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA20G37100.1 (Glycine max), 3'ss of exon 17
taa-actaatgatcatgaaggtgttagtatattggtgttttgtttgttttttttttgtttttttttgttttaatgaaatcttatcttgttcattccttcagATCACAGGGATACGATTTATGTGGGAAAATATTATCCAGTCCATTAGAAAAGTGAAATCTGGTGATAAAGGTCTTGGTTGCATTCTAGCTCACACCATGG
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tattgccatttattcaagcatctttgaagtttttacattgtgtttgttggttttttggatttggt-atttttctacaatttaatttgtttgatgtttgcagATTACTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGG
upper sequence: Vv14s0036g01460.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G08600.2 (Arabidopsis thaliana), 3'ss of exon 15
-------------------------------------------------------taaactaatgatcatgaaggtgttagtatattggtgttttgtttgttttttttttgtttttttttgttttaatgaaatcttatcttgttcattccttcagATCACAGGGATACGATTTATGTGGGAAAATATTATCCAGTCCATTAGAAAAGTGAAATCTGGTGATAAAGGTCTTGGTTGCATTCTAGCTCACACCATGG
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gttagcatttacatatgtgtatccctatcatcataatatacttccatctcgcttgtcacctat--accattgggtattaaagatagccatctcgactagaaatgcctattatggaaatagcttttgctgtaagtttgga--gttttttttttcagGTAACAGGGATAAGATTTATGTGGGAAAATATTATTCAGTCTATCAGCAGAGTCAAGTCTGGTGATAAAGGTCTTGGTTGCATTCTAGCACATACAATGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttttttgtttttttttgttttaatgaaatcttatcttgttcattccttcagATCACAGGGATACGATTTATGTGGGAAAATATTATCCAGTCCATTAGAAAAGTGAAATCTGGTGATAAAGGTCTTGGTTGCATTCTAGCTCACACCATGG
ttttaat putative branch site (score: 3)
tcttatcttgttcatt putative PPT
tttttgtttttttttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaactaatgatcatgaaggtgttagtatattggtgttttgtttgttttttttttgtttttttttgttttaatgaaatcttatcttgttcattccttcagATCACAGGGATACGATTTATGTGGGAAAATATTATCCAGTCCATTAGAAAAGTGAAATCTGGTGATAAAGGTCTTGGTTGCATTCTAGCTCACACCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
-aaactaa
- - - - -gatcatg
- - - - - - - - - - - - - - - -tggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa