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gtacaagagggcatttctatcatacttagcagtgctgaccaattactcagatgtttgcttcctctaacatgttccctaaatttctatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAATTTTGAAGTCCAGAGGCCATTTAGAATCTGGAGTATTGAACTCAAATTT
species | Vitis vinifera |
transcript | Vv11s0016g04970.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAG CTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAAEST: gi|110387459|gb|EC952124.1|EC952124
genomic: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAGgtacaagagg ... tatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAA
EST: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAG CTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAAEST: gi|33401973|gb|CF207600.1|CF207600
genomic: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAGgtacaagagg ... tatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAA
EST: TGATGAAGCATATATTTGGTAATAAGGCAAAAGATTACTCACAAGGAGAG CTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAAEST: gi|71883292|gb|DT032347.1|DT032347
genomic: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAGgtacaagagg ... tatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAA
EST: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAG CTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAAEST: gi|71886807|gb|DT035862.1|DT035862
genomic: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAGgtacaagagg ... tatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAA
EST: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAG CTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAAEST: gi|71887175|gb|DT036230.1|DT036230
genomic: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAGgtacaagagg ... tatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAA
EST: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAG CTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAAEST: gi|33402844|gb|CF208471.1|CF208471
genomic: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAGgtacaagagg ... tatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAA
EST: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAG CTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAAEST: gi|33402755|gb|CF208382.1|CF208382
genomic: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAGgtacaagagg ... tatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAA
EST: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAG CTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAAEST: gi|110707462|gb|EE083887.1|EE083887
genomic: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAGgtacaagagg ... tatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAA
EST: TGATGAAGCATATATCTGGTAATAAGACAAAAGATTACTCACAAGGAGAG CTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAA
genomic: TGATGAAGCATATATCTGGTAATAAGGCAAAAGATTACTCACAAGGAGAGgtacaagagg ... tatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAA
caattactcagatgtttgcttcctctaacatgttccctaaatttctatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAATTTTGAAGTCCAGAGGCCATTTAGAATCTGGAGTATTGAACTCAAATTT
tttctat CT-rich tract
taaatttctatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaagagggcatttctatcatacttagcagtgctgaccaattactcagatgtttgcttcctctaacatgttccctaaatttctatattgcagCTCACAGGCATACTCAAAGAGCTTGGATACACGGAAGACATGGTTTACAAATTTTGAAGTCCAGAGGCCATTTAGAATCTGGAGTATTGAACTCAAATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG