1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtagctacttcacatttctggttcctgcttgcatttacattaatccaatctgacttcattatccatggaatttatctggggttcatatctgtaactttgttgcagGTGGTGAAGATGGAAGACCCTCTGGCTGGTCTTCGGCAGATCCCTCTCGCAGGAGGACCACTGTACCAGCTCTAAATCTTGGAAGCTTGAAACAAAAAAG
species | Vitis vinifera |
transcript | Vv09s0002g01740.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACCAAGCCATGGGATCCCTCCTGCTGTTGCCAACATGGATAGACAATCAG GTGGTGAAGATGGAAGACCCTCTGGCTGGTCTTCGGCAGATCCCTCTCGCAEST: gi|110384373|gb|EC948804.1|EC948804
genomic: ACCAAGCCATGGGATCCCTCCTGCTGTTGCCAACATGGATAGACAATCAGgtagctactt ... tttgttgcagGTGGTGAAGATGGAAGACCCTCTGGCTGGTCTTCGGCAGATCCCTCTCGCA
EST: CTGCTGTTGCCAACATGGATAGACAATCAG GTGGTGAAGATGGAAGACCCTCTGGCTGGTCTTCGGCAGATCCCTCTCGCA
genomic: CTGCTGTTGCCAACATGGATAGACAATCAGgtagctactt ... tttgttgcagGTGGTGAAGATGGAAGACCCTCTGGCTGGTCTTCGGCAGATCCCTCTCGCA
tgacttcattatccatggaatttatctggggttcatatctgtaactttgttgcagGTGGTGAAGATGGAAGACCCTCTGGCTGGTCTTCGGCAGATCCCTCTCGCAGGAGGACCACTGTACCAGCTCTAAATCTTGGAAGCTTGAAACAAAAAAG
ctgtaac putative branch site (score: 3)
ctttgtt CT-rich tract
aatttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctacttcacatttctggttcctgcttgcatttacattaatccaatctgacttcattatccatggaatttatctggggttcatatctgtaactttgttgcagGTGGTGAAGATGGAAGACCCTCTGGCTGGTCTTCGGCAGATCCCTCTCGCAGGAGGACCACTGTACCAGCTCTAAATCTTGGAAGCTTGAAACAAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG