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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatagtcttgtaatttgacctctgtttttggctgttctacaacctttatttttttacatttctttgagttgtttaaactgacttaatgggatacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGCCAATCCTCGCCAATTCAAGATCCCCGACTGGTTTCTTAACAGGAAGAAG

Basic information

species Vitis vinifera
transcript Vv07s0151g00870.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110396954|gb|EC962662.1|EC962662
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|34550966|gb|CF519172.1|CF519172
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110422753|gb|EC989083.1|EC989083
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110695917|gb|EE074478.1|EE074478
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110401398|gb|EC968008.1|EC968008
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110716948|gb|EE092386.1|EE092386
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGTGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|34550098|gb|CF518316.1|CF518316
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110427747|gb|EC994197.1|EC994197
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110418336|gb|EC984483.1|EC984483
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|34415060|gb|CF413814.1|CF413814
EST:     GCTAATATCGTCGGCAAGAAGGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: GCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110703206|gb|EE079847.1|EE079847
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGTGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110706176|gb|EE083859.1|EE083859
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|28968828|gb|CB347861.1|CB347861
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATAGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110715187|gb|EE092948.1|EE092948
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110429102|gb|EC995590.1|EC995590
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110686957|gb|EE063949.1|EE063949
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110686398|gb|EE063990.1|EE063990
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110725291|gb|EE101628.1|EE101628
EST:     CAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110426519|gb|EC992932.1|EC992932
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|32460775|gb|CD801949.1|CD801949
EST:     GCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCACAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTT
genomic: GCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCT--CAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTT
EST: gi|110706212|gb|EE081539.1|EE081539
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGTGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110701480|gb|EE079100.1|EE079100
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|30134618|gb|CB919956.1|CB919956
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACTTGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|87586595|gb|DY474808.1|DY474808
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110380839|gb|EC946135.1|EC946135
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|30129040|gb|CB914379.1|CB914379
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110688898|gb|EE067978.1|EE067978
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110376910|gb|EC941983.1|EC941983
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110724006|gb|EE099466.1|EE099466
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGTGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110400716|gb|EC967291.1|EC967291
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110409350|gb|EC975011.1|EC975011
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCGGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110697220|gb|EE074017.1|EE074017
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110687995|gb|EE066043.1|EE066043
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
EST: gi|110429849|gb|EC996360.1|EC996360
EST:     CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAG                         AGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC
genomic: CGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGgtttttactt ... atacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttttttacatttctttgagttgtttaaactgacttaatgggatacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGCCAATCCTCGCCAATTCAAGATCCCCGACTGGTTTCTTAACAGGAAGAAG
     tttttacatttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatagtcttgtaatttgacctctgtttttggctgttctacaacctttatttttttacatttctttgagttgtttaaactgacttaatgggatacttgtagAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGCCAATCCTCGCCAATTCAAGATCCCCGACTGGTTTCTTAACAGGAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - -tgacctc
- - - - - - - - - - - - - - tggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactga