Sequence
atgc intronic sequence ATGC exonic sequence...gtgctttcattggaaggttggaagcaattgttgcctgttgaagcaacaagatcttctactgtttatatatgttgtcatgtattcttcaattgtcatgcagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAGTGATGACATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os03g02150.1 (Oryza sativa), 3'ss of exon 12
-gtgctt--tcattggaaggttggaagcaattgttgcctgttgaagcaacaagatcttctactgtttatatatgttgtcatgtattcttcaattgtcatgcagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAGTGATGACATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGAC
|| || | | ||| | | | | | | | | ||| | | || | | || | || | || || || || | | |||||||| || || || || ||| |||| ||||| |||||||||||||| |||||||| ||||||| ||| || || || ||||| || |||||||||||
agttctgaactacctgtaggatagtaactctagctagc-attggactagttttatgtgaaattgatgatttccaccaatatctaactttt--tttttctatagGTATGTCGATGTTATTCTGCAGCTGATAGACAAAGCAGGAGATTTTGTAAGTGATGATATATGGTATCGAGTGGTACAATTTGTCACCAACAATGAAGAT
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G137236_T01 (Zea mays), 3'ss of exon 13
-gtgctttcattgga--aggttggaagcaattgttgcctgttgaagcaacaagatcttctactgtttatatatgttgtcatgtattcttcaattgtcatgcagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAGTGATGACATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGAC
| | | |||| || | ||| | || | | | | || || | | | || || | | || | | || |||||||| || || || || || | || ||||| || ||||||||||| |||||||| ||||||| ||| || || || |||||||| ||||| ||||||
aacaactgtagcaaattgtgttgtcagttctgtgtgcattttaatttatgcaatttcgtcaccattgagtttt--tgctatatctgatttgtat-ttgtgtagGTATGTTGATGTTATTCTTCAACTTATAGACAAAGCTGGAGATTTTGTAAGTGATGATATATGGTATCGAGTGGTACAATTTGTTACGAACAACGAAGAC
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 12
gtgctttcat-tggaaggttggaagcaattgttgcctgttgaagcaacaagatcttctactgtttatatatgttgtcatgtattcttcaattgtcatgcagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAGTGATGACATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGAC
|| ||| | || || | ||| |||| | || | | | ||| || || || || | | | || ||||||||| |||||||| || || || ||||||||||| ||||||||||| || ||||||||||||||||| || || ||||||||||||||||||||||||
gtcacgccatatttcagtacaaaaaatacccttgatatttgatcagaacttattgttgatttaatatgtacactgatat-catgccatcccttttatacagGTATGTTGACGTGATTCTTCAATTAATTGACAAGGCCGGAGATTTTGTTAGCGATGACATATGGTTTCGGGTGGTTCAGTTTGTTACAAACAATGAAGAC
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 12
-gtgctttcattggaaggttggaagcaattgttgcctgttgaagcaacaagatcttctactgtttatatatgttgtcatgtattcttcaattgtcatgcagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAGTGATGACATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGAC
| ||| | || | | |||| | || | | ||| ||| || || || || || | || ||||||||| || ||||| || || || ||||||||||| || ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
tcaccccatatttcagtacaaaaaattcccttgatatcttgatcagaacttattgttgatgtaatatgtatactgatatcatgtcatccctt-ttatacagGTATGTTGATGTGATTCTTCAATTAATTGACAAGGCCGGTGATTTTGTCAGTGATGACATATGGTTTCGGGTGGTTCAGTTTGTTACAAACAATGAAGAC
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT5G22770.2 (Arabidopsis thaliana), 3'ss of exon 13
--------------------------------gtgctttcat---tggaaggttggaagcaattgt-tgc-ctgttgaagcaacaagatcttctactgtttatatatgttgtcat-gtattcttcaattgtcatg----cagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAGTGATGACATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGAC
| | ||||| || |||| || | ||| | | | || ||| | || | || | | | | |||| | ||| ||||||||| || |||||||| |||||||| |||||||| || |||||||| || |||||||||||||||||||| || |||||||| ||||| |||||||||
gtgaggataactcgatacgaagtatatgtacacttcattcatgcacacaaatttggttacagtaacatgcattatccatttggtgtgacctttagatccttgcaaatcaactggttaaagatgttaattttgatgttttcagGTATGTTGATGTGATCCTTCAGTTGATCGACAAGGCTGGGGATTTTGTTAGCGATGACATATGGTTTCGTGTGGTTCAGTTTGTAACAAATAATGAAGAC
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 3'ss of exon 12
------gtgctttcattggaaggttggaagcaattgtt---gcctgttgaagcaacaaga-------tcttctactgtttatatatgttgtca--tgtattcttcaattgtcatg----cagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAGTGATGACATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGAC
| | |||| | || || || || | || ||| | ||| | ||| | | | | | | |||| | ||| ||||||||| || |||||||| |||||||| |||||||| || |||||||| || |||||||| ||||||||||| || |||||||| ||||| |||||||||
gtaaagagaactcgacaagaagtatatgtacattttttcatgcacactatagagacatgtgctgtgccctttagatccttacacaagcaattggtcaaagatgttaattttgatgttctcagGTATGTAGATGTGATCCTTCAGTTGATCGACAAGGCTGGGGATTTTGTTAGCGATGACATTTGGTTTCGTGTGGTTCAGTTTGTAACAAATAATGAAGAC
upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: PP1S507_6V6.1 (Physcomitrella patens), 3'ss of exon 12
-----gtgctttcattggaaggttggaagcaattgttgcctgttgaagcaacaagatcttctactgtttatatatgttgtcatgtattcttcaattgtcat-gcagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAGTGATGACATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGAC
||| || ||| | | ||| | | || | | ||| | ||| | | ||| || | | || | || | |||| | ||||||||||| || || | || | || || || || || |||||||| ||||||||||| |||| ||| ||||| ||||||||||| ||| ||||| ||
attctgtgtttatattcgttg--tggtatatagtgatacttgtcagtgaaacttgg----cgcctggaataatccactaaactctacttggaaactctcattgtagGTATGTGGATGTCATATTGCAACTCATCGAGAAAGCTGGTGATTTTGTAAGTGATGACATTTGGTATCGGGTTGTACAGTTTGTTACCAACGATGAACACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857368|gb|DT006423.1|DT006423EST: TCACTAAAAGCAGCAATCCTAGCTGAGAAATTTGCCCCTGACCTATCATG GTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAG
genomic: TCACTAAAAGCAGCAATCCTAGCTGAGAAATTTGCCCCTGACCTATCATGgtaaggatgg ... tgtcatgcagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaagatcttctactgtttatatatgttgtcatgtattcttcaattgtcatgcagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAGTGATGACATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGAC
tactgtttatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgctttcattggaaggttggaagcaattgttgcctgttgaagcaacaagatcttctactgtttatatatgttgtcatgtattcttcaattgtcatgcagGTATGTGGACGTGATCCTACAGTTGATTGACAAGGCAGGAGATTTTGTCAGTGATGACATATGGTTTCGTGTTGTGCAGTTTGTTACAAACAATGAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
-tgctttc
- - - - - - - - - - gaagcaa
- - - - - - - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - - - gcaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgta