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gtgcattatttgtgtaattttttaaggaagattgaggtagtaaaacaagtactggataaattttagaataatcctggtgtttatttttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGACACTGCATGGACAATTGTTTGTCAGAGTTCCATTTGAGCAGTCAGATT
species | Vitis vinifera |
transcript | Vv04s0044g01840.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGEST: gi|56409766|gb|CX018018.1|CX018018
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGEST: gi|110703600|gb|EE080590.1|EE080590
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCCTTCA-GAATCGACCCACACCAGACATCAGCTGTGGTEST: gi|351041413|gb|FQ447540.1|FQ447540
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACC-TTCAAGAATCGACCCACACCAGACATCAGCTGTGGT
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGEST: gi|110374828|gb|EC939763.1|EC939763
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGEST: gi|110691152|gb|EE068926.1|EE068926
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGEST: gi|110711713|gb|EE088506.1|EE088506
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGEST: gi|34363693|gb|CF405278.1|CF405278
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACCCCAGACATCAGCTGTGGTGEST: gi|56409464|gb|CX017716.1|CX017716
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGEST: gi|56409535|gb|CX017787.1|CX017787
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGEST: gi|46911394|gb|CN546769.1|CN546769
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGEST: gi|352794399|gb|FQ481630.1|FQ481630
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGTGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGEST: gi|30302776|gb|CB979570.1|CB979570
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
taaaacaagtactggataaattttagaataatcctggtgtttatttttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGACACTGCATGGACAATTGTTTGTCAGAGTTCCATTTGAGCAGTCAGATT
tgtttatttttctctc CT-rich tract
ataaattttagaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcattatttgtgtaattttttaaggaagattgaggtagtaaaacaagtactggataaattttagaataatcctggtgtttatttttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTGACACTGCATGGACAATTGTTTGTCAGAGTTCCATTTGAGCAGTCAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG