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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaggaatttcttttggtttgaattttctccaatcatgccttttactacgtgaatctctaaaactgcatctacatgtcatattgcagCCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGCTTAGATTCTAGAGGTCTATATATTTATGATGATGGTTTTCGCTTTGTTA

Basic information

species Vitis vinifera
transcript Vv19s0014g01900.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA19G41400.1 (Glycine max), 3'ss of exon 11
gtaaaggaatttcttttggtttgaattttctccaatcatgccttttactacgtgaatctctaaaactgcatctacatgtcatattgcagCCAACTGCTCAGGCAGATGAGTTGAAAAG------------GTTACCACTAGTTGCGGAGAGCTTAGATTCTAGAGGTCTATATATTTATGATGATGGTTTTCGCTTTGTTA
        |  |   ||   || ||      ||||| |||   || |    || |    |   || |     | | |    | ||  || || |||  |||||  |||| || |||||            ||||||  |   || |||||||||||| ||||||||||| |||||||||||||||||              
----gtatacattgcttaccttaaaaagataccaataatgtggttaaac-tgtcagatgcatgaattattaattcctcctgtgttctagGCATCTGTACAGGCTAATGACTTAAAAAGTGTTGAGAGAAGGTTACCTTTGACTGGGGAGAGCTTAGACTCTAGAGGTCTTTATATTTATGATGATGGCA------------

upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G38830.1 (Glycine max), 3'ss of exon 10
gtaaaggaatttcttttggtttgaattttctccaatcatgccttttactacgtgaatctctaaaactgcatctacatgtcatattgcagCCAACTGCTCAGGCAGATGAGTT------------GAAAAGGTTACCACTAGTTGCGGAGAGCTTAGATTCTAGAGGTCTATATATTTATGATGATGGTTTTCGCTTTGTTA
        |  |   ||   || ||      ||||| ||    |  |    |  |  |     |  |     | | |    | || ||| || |||  ||||| |||||| |            || |||||||||  |   || |||||||||||| |||||||| || |||||||||||||||||||            
----gtatacgttgcttaccttaaaaagataccaataatatggtc-atagtgaaagacaagtgacttattaattcctccggtgttccagGCATCTGTACAGGCTGATGAGGTACAAAGTGTTGAGAGAAGGTTACCTTTGACTGGGGAGAGCTTAGACTCTAGAGGCCTTTATATTTATGATGATGGTT------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110694926|gb|EE072359.1|EE072359
EST:     CTTGATTCGGATTGATGAGTATCTTTTAAAG                         CCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGC
genomic: CTTGATTCGGATTGATGAGTATCTTTTAAAGgtaaaggaat ... catattgcagCCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGC
EST: gi|110695491|gb|EE073572.1|EE073572
EST:     ATCTTTTAAAG                         CCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGC
genomic: ATCTTTTAAAGgtaaaggaat ... catattgcagCCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGC
EST: gi|110718185|gb|EE094730.1|EE094730
EST:     TGAAGCTTCTATATCCTAGCTTGATTCGGATTGATGAGTATCTTTTAAAG                         CCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGC
genomic: TGAAGCTTCTATATCCTAGCTTGATTCGGATTGATGAGTATCTTTTAAAGgtaaaggaat ... catattgcagCCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGC
EST: gi|33406528|gb|CF212155.1|CF212155
EST:     GAGTATCTTTTAAAG                         CCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGC
genomic: GAGTATCTTTTAAAGgtaaaggaat ... catattgcagCCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatgccttttactacgtgaatctctaaaactgcatctacatgtcatattgcagCCAACTGCTCAGGCAGATGAGTTGAAAAGGTTACCACTAGTTGCGGAGAGCTTAGATTCTAGAGGTCTATATATTTATGATGATGGTTTTCGCTTTGTTA
                       ctctaaa  putative branch site (score: 3)
        ttttacta  TA-rich tract