1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ggattttgattggatgaaccaacactatgtatacagtatacttatgctattgctttataggtgaatgctggacttatcttattgctcatactctgtttagGTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATATTTGATACAACGCCTTCAAAAGTTATATCTAATGAATTGACA
species | Vitis vinifera |
transcript | Vv16s0050g00590.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGATTATGTAATCAAGGATGAAGACATGGACCAAGCAACCATGCAG GTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATAEST: gi|37188854|gb|CF608203.1|CF608203
genomic: CAGAGGATTATGTAATCAAGGATGAAGACATGGACCAAGCAACCATGCAGgtaagttttt ... ctctgtttagGTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATA
EST: AAGCAACCATGCAG GTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATAEST: gi|71889427|gb|DT038482.1|DT038482
genomic: AAGCAACCATGCAGgtaagttttt ... ctctgtttagGTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATA
EST: CAGAGGATTATGTAATCAAGGATGAAGACATGGACCAAGCAACCATGCAG GTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATA
genomic: CAGAGGATTATGTAATCAAGGATGAAGACATGGACCAAGCAACCATGCAGgtaagttttt ... ctctgtttagGTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATA
gctattgctttataggtgaatgctggacttatcttattgctcatactctgtttagGTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATATTTGATACAACGCCTTCAAAAGTTATATCTAATGAATTGACA
ctctgttt CT-rich tract
ttatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggattttgattggatgaaccaacactatgtatacagtatacttatgctattgctttataggtgaatgctggacttatcttattgctcatactctgtttagGTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATATTTGATACAACGCCTTCAAAAGTTATATCTAATGAATTGACA
- - - tgattgg
- - - - - - - - - ccaacac
- - - - - - - - - - - - - - - - - - - - cttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcata