Sequence
atgc intronic sequence ATGC exonic sequence...ctcttgagtgagtgtatgtgtctttgtgtttgtgtgtgtgtgtgtgtgttttggagatgatgtcactagaaggttaaagaattttgcactttccatacagGGGCTGCTGAAGGTTGGTGCAGATGGTGCTAAGCATTGGGCATATGGAGGTGACTTTGGGGATATCCCTAATGATTTGAACTTCTGTCTGAATGGCATTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G26700.1 (Glycine max), 3'ss of exon 11
ctcttgagtgagtgtatgtgtctttgtgtttgtgtgtgtgtgtgtgtgttttggagatgatgtcactagaaggttaaagaattttgcactttcc----atacagGGGCTGCTGAAGGTTGGTGCAGATGGTGCTAAGCATTGGGCATATGGAGGTGACTTTGGGGATATCCCTAATGATTTGAACTTCTGTCTGAATGGCATTA
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---gtgagtg-gtttttgaatatcgtaaccaatcaatgaatgatcaacttc---actttatgttgtctgaattctctc-aattttacactttgcttggatgtagGCCTTGGTGAAAGTTTATGAAGATGGTACCAAGCATTGGGCATATGGAGGTGAATTTGGGGATGTTCCCAATGACTTGAATTTCTGTTTGAATGGCCTCA
upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA15G37670.1 (Glycine max), 3'ss of exon 6
ctcttgagtgagtgtatgtgtctttgtgtttgtgtgtgtgtgtgtgtgttttggagatgatgtcactaga----aggttaaagaattttgcacttt----ccatacagGGGCTGCTGAAGGTTGGTGCAGATGGTGCTAAGCATTGGGCATATGGAGGTGACTTTGGGGATATCCCTAATGATTTGAACTTCTGTCTGAATGGCATTA
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---gtgagtg-gtttttgaatacc-gtatccaaatcaaattg-atgaatgatcaacatcactttattttgtctgagttctctcaattttacactttgcttgcatgtagGCCTTGGTGAAAGTTTATGAAGATGGTACAAAGCATTGGGCATATGGAGGTGAATTCGGGGATGTTCCCAATGACTTGAATTTCTGTTTGAATGGCCTCA
upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT3G54440.3 (Arabidopsis thaliana), 3'ss of exon 11
--ctcttgagtgagtgtatgtgtctttgtgtttgtgtgtgt-gtgtgtgtgttttggagatgatgtcactagaaggttaaagaattttgcactttccatacagGGGCTGCTGAAGGTTGGTGCAGATGGTGCTAAGCATTGGGCATATGGAGGTGACTTTGGGGATATCCCTAATGATTTGAACTTCTGTCTGAATGGCATTA
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acataaagataaagtaggtaagatcctatagtaatgagcgcagtagatatatatggtcagccaaatccatgcataaaattagtcttttgc---tatcatttagGGGCTATTGAAACTGGGGTCAGATGGCATTAAGCGTTGGGCATATGGAGGGGACTTTGGTGACCAGCCTAATGATTTGAACTTCTGTCTCAATGGGCTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgttttggagatgatgtcactagaaggttaaagaattttgcactttccatacagGGGCTGCTGAAGGTTGGTGCAGATGGTGCTAAGCATTGGGCATATGGAGGTGACTTTGGGGATATCCCTAATGATTTGAACTTCTGTCTGAATGGCATTA
cactttcc CT-rich tract
ttaaagaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcttgagtgagtgtatgtgtctttgtgtttgtgtgtgtgtgtgtgtgttttggagatgatgtcactagaaggttaaagaattttgcactttccatacagGGGCTGCTGAAGGTTGGTGCAGATGGTGCTAAGCATTGGGCATATGGAGGTGACTTTGGGGATATCCCTAATGATTTGAACTTCTGTCTGAATGGCATTA
- - - - - - -gtatgtg
- - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca