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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtcatcatatttctaaatctttaattctacttccccctccctccattaagctttagctgtggaagtactgtcttcttgtagGAGTCAATGGGGCATGTGGACATTGATCTTACAGACGTTGTGCATAATGGGCGCATCAACCACAAATATCATCTCATCAATTCTAAGAATGGACAAATAC

Basic information

species Vitis vinifera
transcript Vv13s0019g04450.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45771176|gb|CN007028.1|CN007028
EST:     TCCATATTCAAGTAATAAGCCAGCGATCAGGAATCGGTTTTAGGTCAAAG                         GAGTCAATGGGGCATGTGGACATTGATCTTACAGACGTTGTGCATAATGGG
genomic: TCCATATTCAAGTAATAAGCCAGCGATCAGGAATCGGTTTTAGGTCAAAGgtattgtcat ... cttcttgtagGAGTCAATGGGGCATGTGGACATTGATCTTACAGACGTTGTGCATAATGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacttccccctccctccattaagctttagctgtggaagtactgtcttcttgtagGAGTCAATGGGGCATGTGGACATTGATCTTACAGACGTTGTGCATAATGGGCGCATCAACCACAAATATCATCTCATCAATTCTAAGAATGGACAAATAC
                                         ctgtcttctt  CT-rich tract
                  attaa  TA-rich tract