Sequence
atgc intronic sequence ATGC exonic sequence...gccattggcaagtctattttgatgtagtttaagtaatccacatcatttggacttgaaattcgagttgggcctaagctggttcagtgtggatttgttgcagGTAGATGGAGATACTAGTACCAATGATACTGTCATTGCTTTAGCGAGTGGGCTATCTGGGTCAACCAGGATATCATCTTTGATCAGTCACGAGGCAATAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA10G05090.1 (Glycine max), 3'ss of exon 10
gccattggcaagtctattttgatgtagtttaagtaatccacatcatttggacttgaaattcgagttgggcctaag-ctggttcagtgtggattt-gttgcagGTAGATGGAGATACTAGTACCAATGATACTGTCATTGCTTTAGCGAGTGGGCTATCTGGGTCAACCAGGATATCATCTTTGATCAGTCACGAGGCAATAC
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--atttaatgtggttctcttgtgcaaggtggtgccatccaaagattttgcccccaatttttggattgtaattgattcctatgttttgcatattttgctacagGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCTTTGGCTAGTGGGTTGTCTGGGCTAGGCTGCATATCTTCTCTAGACAGTGATGAGGCTATTC
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G19450.2 (Glycine max), 3'ss of exon 11
------gccattggcaagtctattttgatgtagtttaagtaatccacatcatttggacttgaaattcgagttgggcctaagctggttcagtgtggatttgttgcagGTAGATGGAGATACTAGTACCAATGATACTGTCATTGCTTTAGCGAGTGGGCTATCTGGGTCAACCAGGATATCATCTTTGATCAGTCACGAGGCAATAC
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caaaagattattagccaatttaatgtggtgccatccgaagcttttgcccc---caatttttggattgtaattgattcctat---gttttgcattattttgctacagGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTC
upper sequence: Vv08s0040g03320.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT2G37500.2 (Arabidopsis thaliana), 3'ss of exon 11
gccattggcaagtctattttgatgtagtttaagtaatccacatcatttggacttgaaattcgagttgggcctaagctggttcagtgtggatttg---ttgcagGTAGATGGAGATACTAGTACCAATGATACTGTCATTGCTTTAGCGAGTGGGCTATCTGGGTCAACCAGGATATCATCTTTGATCAGTCACGAGGCAATAC
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-------------gtatgtt-acacaatttcaattttcaaacattgttgtaattaaa--ttatttcatttccagtctcattaaataaaagcatggtcttatagGTAGATGGAGACACGAGTACTAACGACACAGTCATTGCTTTAGCTAGCGGGCTATCTGGATCACCTTCTATATCATCTTTGAACTGTAAAGAAGCTGCAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttggacttgaaattcgagttgggcctaagctggttcagtgtggatttgttgcagGTAGATGGAGATACTAGTACCAATGATACTGTCATTGCTTTAGCGAGTGGGCTATCTGGGTCAACCAGGATATCATCTTTGATCAGTCACGAGGCAATAC
ttgaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gccattggcaagtctattttgatgtagtttaagtaatccacatcatttggacttgaaattcgagttgggcctaagctggttcagtgtggatttgttgcagGTAGATGGAGATACTAGTACCAATGATACTGTCATTGCTTTAGCGAGTGGGCTATCTGGGTCAACCAGGATATCATCTTTGATCAGTCACGAGGCAATAC
-ccattgg
- - - - - - - - - - - - - - - - - - -ccacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggttc