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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttgccttttggttacaacacctgttttctatttgcaggcacgggataaccattattcttatttggaagtaaggatgataaactatttgagacaggctattctgttctgatgccttgtcttttcattctcttaatttttcttgatattggtttagTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAGTTTTCCATCAAGTTCAGGATATAATGAGGACCCAACAGCAGCAATGGTA

Basic information

species Vitis vinifera
transcript Vv06s0080g01110.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0080g01110.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA11G18400.1 (Glycine max), 3'ss of exon 7
gtattgttgccttttggttacaacacctgttttctatttgcaggcacgggataaccattattcttatttggaagtaaggatgataaactatttgagacaggctattctgttctgatgccttgtcttttcattctcttaatttttcttgatattggtttagTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAGTTTTCCATCAAGTTCAGGATATAATGAGGACCCAACAGCAGCAATGGTA
||||| ||   |  |||||  ||   |  ||  |||   |     | |     |  |  || ||   |  ||   || | || |  || ||| |  ||| | || |   ||| |    | || | | || ||       ||||  |||  |||   |||||||||||||||| |||||||| |||||||||||| |||| |   | || |   ||||||| ||| |||    || | |  | | | || |||   |    
gtattttt-tttcatggttctaaagtcatttacctaaagg-gtttatgatcagatgacaatgctagat--gagacaatggtgcttcacaatt-gcaacatg-taataaattcaggattcctgacctctcctt-------ttttctttgccatt---ttagTCAATTTGAAGAAAAGTTTGAAGAGATTAATGGTGTTGATGTTGCACCCAAACTTCCATCCAGTCCAGATGGTACTAAACATCAATCAACAGTGGTCCCG

upper sequence: Vv06s0080g01110.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA12G09860.1 (Glycine max), 3'ss of exon 11
gtattgttgccttttggttacaacacctgttttctatttgcaggcacgggataaccattattcttatttggaagtaaggatgataaactatttgagacaggctattctgttctgatgccttgtcttttcattctcttaatttttcttgatattggtttagTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAGTTTTCCATCAAGTTCAGGATATAATGAGGACCCAACAGCAGCAATGGTA
                            || || | |||   |       || |      |      ||   | |    |||       | |||   || |  ||    ||| |    | || | | || || |||      |   ||  |||   |||||||||||||||| |||||||| ||||||||||||  ||| |   | || |   ||||||||||| |||    ||   |  | | | || |||   |   |
----------------------------gtatttt-tttatggttctaaaatcatttacctcaagggtttataattgcaatggcttcacaattgcagcatgtcataa-attcaggattcctgacctctccttttctc-----tctctgccatt---ttagTCAATTTGAAGAAAAGTTTGAAGAGATTAATGGTGCTGATGTTGCACCCAAACTTCCATCAAGTCCAGATGTTACCAAACAACAATCAACAGTGGTCCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690767|gb|EC957498.1|EC957498
EST:     AGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAG                         TCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAG
genomic: AGAATAGTTCTTAGAAGCTCAATGGGCCCTATAGATGTTTACCTTGTCAGgtattgttgc ... attggtttagTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttctgatgccttgtcttttcattctcttaatttttcttgatattggtttagTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTCTTGAGGCACCTCCAAGTTTTCCATCAAGTTCAGGATATAATGAGGACCCAACAGCAGCAATGGTA
                              ttaatttttcttgata  TA-rich tract