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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatatggacaaacttgtgttattagtgaatatttttctgcatttttttaacttggataatatttttcttgtagGGCATAATATTGATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCTGGTAGATTTGACAGGCAT

Basic information

species Vitis vinifera
transcript Vv16s0050g02630.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os01g43150.2 (Oryza sativa), 3'ss of exon 2
gtaacatatggacaaacttgtgttattagtgaatatttttctgcatttt-tttaacttggataat--atttttcttgtagGGCATAATATTGATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCTGGTAGATTTGACAGGCAT
||||| |    ||| | ||     |  |||  ||        | | ||| | ||| |||  |  |  |||  | ||| |||| |||||  ||||||| || ||||||||||| |||||||||||||||||  | ||||||||||||||||| || ||||||
gtaaccttatcacatattt-----aacagtccatcacacagaggactttatgtaaattgtgttttctattgattttgcagGGAATAATTGTGATGGCTGCGACAAACTTGCCAGATATTCTTGATCCAGCACTTACAAGACCTGGTAGATTCGATAGGCAT

upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G004040_T01 (Zea mays), 3'ss of exon 10
-----------gtaacatatggacaaacttgtgttattagtgaatatttttctgcatttttttaacttggataatatttttcttgtagGGCATAATATTGATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCTGGTAGATTTGACAGGCAT
            || ||| ||  | ||          || | |  | |||     | | ||    |      |   ||| |||   |||| |||||  ||||||| |||||||||||||| || ||||||||||| ||  | |||||||||||||||||||| ||||||
gcaatgctagtctatcatgtgatcgaatagaccaatgtactcagaactttatctgactcttgcttccaattgatcttttatctcacagGGAATAATTGTGATGGCTGCAACAAACTTGCCAGACATTCTTGATCCTGCACTCACAAGACCTGGTAGATTTGATAGGCAT

upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G156069_T01 (Zea mays), 3'ss of exon 10
----------gtaacatatggacaaacttgtgttat-tagtgaatatttttctgcatttttttaacttggataatatttttcttgtagGGCATAATATTGATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCTGGTAGATTTGACAGGCAT
           || || ||   |||| | | |  || || | |  | ||| |   | | ||    |      |   ||| ||||  |||| |||||  ||||||| |||||||||||| | || ||||||||||| ||  | |||||||||||||||||||| ||||||
gtatgctagtctatcacattatcaaa-tagagcaatatattcagaactttacctgactcttgcttccaattgatcttttatcttacagGGAATAATTGTGATGGCTGCAACAAACTTGGCAGACATTCTTGATCCTGCACTCACAAGACCTGGTAGATTTGATAGGCAT

upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA14G29810.1 (Glycine max), 3'ss of exon 2
gtaacatatggacaaacttgtgttattagtgaatatttttctgcatttttttaacttggataatatttt-tcttgtagGGCATAATATTGATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCTGGTAGATTTGACAGGCAT
||| | | || |||   |||   |   | |     ||  ||||  ||||   || |     | |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||  |||||
gtatctt-tgaacag-tttggagtgcaatt---cgttcctctg-gttttagaaattgattcattattttatcttgtagGGAATAATATTGATGGCTGCAACAAACTTGCCTGATATTCTTGACCCAGCTTTAACTAGGCCTGGAAGATTTGATCGGCAT

upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G13140.1 (Glycine max), 3'ss of exon 10
-------gtaacatatggacaaacttgtgttattagtgaatatttttctgcatttttttaacttggataatattttt--cttgtagGGCATAATATTGATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCTGGTAGATTTGACAGGCAT
         ||  | |  |||    || ||  ||| | | | | | ||||   |||  ||| ||    || || |||  ||||||||| |||||| | || || ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || |||
gtatatttcaagttttaaacatttgtgagtgtttaattagtttctctctg---tttcctaatttattcaacatctttatcttgtagGGAATAATAGTAATTGCTGCAACAAACCTGCCTGATATTCTTGATCCCGCTTTAACAAGGCCTGGTAGATTTGATAGACAT

upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G08160.1 (Glycine max), 3'ss of exon 10
gtaacatatggacaaacttgtgttattagtgaatatttttctgcatttttttaacttggataatatttt-tcttgtagGGCATAATATTGATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCTGGTAGATTTGACAGGCAT
||| | | || |||  ||||   |   | |   | ||  ||||  ||||   || |     | |||||| |||| ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||  |||||
gtatctt-tgaacag-cttggagtgcaatt---tgttcctctg-gttttagaaattgattcattattttatcttctagGGAATAATATTAATGGCTGCAACAAACTTGCCTGATATTCTTGACCCAGCTTTAACGAGGCCTGGCAGATTTGATCGGCAT

upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT5G53170.1 (Arabidopsis thaliana), 3'ss of exon 10
----------gtaacatatggacaaacttgtg-ttattagtgaatatttttctgcattt--ttttaacttggataatatttt--tcttgtagGGCATAATATTGATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCTGGTAGATTTGACAGGCAT
           | |    | |   | |||||| ||| |   |    |||    | || |  |  ||  |||  |  ||||||  |  || |||| |||||| | ||||| |||||||||||||||||||| |||||||||||| | |||||||| ||||||||||| || |||
gtacttgttgattaggagtagtgtatcttgtgattacttccgctagtttgcaggaatataatagtactttgctttctattttggttatgcagGGAATAATAGTTATGGCTGCAACAAACTTGCCTGATATACTTGATCCAGCTCTGACAAGACCGGGTAGATTTGATAGACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattagtgaatatttttctgcatttttttaacttggataatatttttcttgtagGGCATAATATTGATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCTGGTAGATTTGACAGGCAT
                          ttttaac  putative branch site (score: 2)
                                         tatttttctt  putative PPT
                      atttttttaacttgga  TA-rich tract