Sequence
atgc intronic sequence ATGC exonic sequencegtatgttcctttttcagtttttgatttacaaaaatgttgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaatgttcaactgtcagGTACTCACATTCCATGGGAAACAGCAACGGAAATATTCAAGAATATTGGGAAGCTATTGATAACACATTTGGATTACAAGGAGGCTTTATCTGGGATTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA15G37670.1 (Glycine max), 3'ss of exon 5
gtatgttcctttttcagtttttgatttacaaaaatgt-tgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaat--gttcaactgtcagGTACTCACATTCCATGGGAAACAGCAACGGAAATATTCAAGAATATTGGGAAGCTATTGATAACACATTTGGATTACAAGGAGGCTTTATCTGGGATTGG
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----gtatgatttgtagttttacatcaacaacataatatgacttctaccgttccctgattttacagtgatagataattatataatttttttttatttgtgatgtccaacccaaatggcagGTATTCACATGCAATGGGAAACAGTAATGGGAATCTACATATATATTGGGAAGCAATTGACAACACATTTGGACTCCAAGGAGGCTTTATTTGGGATTGG
upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G26700.1 (Glycine max), 3'ss of exon 10
gtatgttcctttttcagtttttgatttacaaaaatgttgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaatgttcaac-----tgtcagGTACTCACATTCCATGGGAAACAGCAACGGAAATATTCAAGAATATTGGGAAGCTATTGATAACACATTTGGATTACAAGGAGGCTTTATCTGGGATTGG
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gtatgat---tttgtagttttacatcaacaaca-taatatgacttctactg-ttccctgttgtttacagtgatagataatt-atataatttttttatttgttatgtccaacccaaatggcagGTATTCACATGCAATGGGAAACAGTAATGGGAATCTACATATATATTGGGAAGCAATTGACAACACTTTTGGACTCCAAGGAGGCTTTATTTGGGATTGG
upper sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: PP1S130_43V6.1 (Physcomitrella patens), 3'ss of exon 11
gtatgttcctttttcagtttttgatttacaaaaatgttgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaatgttca--actgtcagGTACTCACATTCCATGGGAAACAGCAACGGAAATATTCAAGAATATTGGGAAGCTATTGATAACACATTTGGATTACAAGGAGGCTTTATCTGGGATTGG
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-------------ccaattcctag---aagacactgtttcagt-tagagatagaagagggtgtt-aggacttaatttaaaccgcacat-tctgattgttgccatggttggtacctacagGTATTCTCATGCCATGGGTAACAGCAATGGAAATATTCAGGCTTATTGGGACGCTATTGATGGGATACACGGTTTACAGGGAGGATTCATCTGGGACTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgacaatgccaattgatttgcataaatatacttataaaaatgttcaactgtcagGTACTCACATTCCATGGGAAACAGCAACGGAAATATTCAAGAATATTGGGAAGCTATTGATAACACATTTGGATTACAAGGAGGCTTTATCTGGGATTGG
aattgatttgcataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttcctttttcagtttttgatttacaaaaatgttgtaatgtacccaaattcaatccttttgacaatgccaattgatttgcataaatatacttataaaaatgttcaactgtcagGTACTCACATTCCATGGGAAACAGCAACGGAAATATTCAAGAATATTGGGAAGCTATTGATAACACATTTGGATTACAAGGAGGCTTTATCTGGGATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG