Sequence
atgc intronic sequence ATGC exonic sequencegtgggtggtagtgtgcaagcaatctttacaaaaagagccatgtggatataaattgtgcctatagtattgctgtttcagctggaatctaacagtgctaatttacacattctacagGTTACACATTATTTAGGTGGAGAAAACTATGTTTTCTGGGGTGGTCGAGAAGGTTATCAAACTCTATTGAACACAGATATGGGAAGAGAGCTTGATCATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G313536_T01 (Zea mays), 3'ss of exon 8
gtgggtggtagtgtgcaagcaatctttacaaaaagagccatgtggatataaattgtgcctatagtattgctgtttcagctggaatctaacagtgctaatttacacattctacagGTTACACATTATTTAGGTGGAGAAAACTATGTTTTCTGGGGTGGTCGAGAAGGTTATCAAACTCTATTGAACACAGATATGGGAAGAGAGCTTGATCATT
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--------------------------------gtgggttatctg--tgatcaccatgatcaatcttccttcatttcgcccaattttttat----ttgaccttatctccttgcagGTCACTCACTACCTAGGTGGTGAAAACTATGTGTTCTGGGGTGGAAGAGAGGGTTACCAAACTCTTCTGAATACTGATATGAAGAGAGAACTTGACCATC
upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G081682_T02 (Zea mays), 3'ss of exon 9
gtgggtggtagtgtgcaagcaatctttacaaaaagagccatgtggat-ataaattgtgcctatagt--attgctgtttcagctggaatctaacagtgctaatttacacattctacagGTTACACATTATTTAGGTGGAGAAAACTATGTTTTCTGGGGTGGTCGAGAAGGTTATCAAACTCTATTGAACACAGATATGGGAAGAGAGCTTGATCATT
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-----------------------------------------gtgggttatctgtgatcaccatgatcaatcttcatttcgcccaattttttat----ttgaccttatctccttgcagGTCACTCACTACCTAGGTGGTGAAAACTATGTGTTCTGGGGTGGAAGAGAGGGTTACCAAACTCTTCTGAATACTGATATGAAGAGAGAACTTGACCATC
upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G005493_T01 (Zea mays), 3'ss of exon 9
gtgggtggtagtgtgcaagcaatctttacaaaaagagccatgtggatataaattgtgcctatagtattgctgtttcagctggaatctaacagtgctaatttacacattctacagGTTACACATTATTTAGGTGGAGAAAACTATGTTTTCTGGGGTGGTCGAGAAGGTTATCAAACTCTATTGAACACAGATATGGGAAGAGAGCTTGATCATT
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--------------------------------gttggttatctg--tgatcatcatgattggtctttcttcactttgcccagttcttaat----ttgacattatctccttacagGTCACTCACTACCTAGGTGGTGAAAACTATGTGTTTTGGGGTGGAAGAGAGGGTTACCAAACTCTTCTGAACACTGATCTTAAGAGAGAACTTGACCATT
upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G07380.1 (Glycine max), 3'ss of exon 9
gtgggtggtagtgtgcaagcaatctttacaaaaagagccatgtggatataaattgtgcctatagtattgctgtttcagctggaatctaacagtgctaatttacacattctacagGTTACACATTATTTAGGTGGAGAAAACTATGTTTTCTGGGGTGGTCGAGAAGGTTATCAAACTCTATTGAACACAGATATGGGAAGAGAGCTTGATCATT
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---------------gtactgttgtgtatgcatgtagtagtaagaaggttcattgtatttttaaaaccattgttc---------ttt-----tgctgatttgaatatattgcagGTGACACATTATTTGGGGGGAGAAAATTATGTTTTCTGGGGTGGTCGTGAAGGTTATCAATCTCTTTTGAACACAGATATGGAGCGAGAGCTTAATCATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatagtattgctgtttcagctggaatctaacagtgctaatttacacattctacagGTTACACATTATTTAGGTGGAGAAAACTATGTTTTCTGGGGTGGTCGAGAAGGTTATCAAACTCTATTGAACACAGATATGGGAAGAGAGCTTGATCATT
tgctaat putative branch site (score: 2)
taatttaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggtggtagtgtgcaagcaatctttacaaaaagagccatgtggatataaattgtgcctatagtattgctgtttcagctggaatctaacagtgctaatttacacattctacagGTTACACATTATTTAGGTGGAGAAAACTATGTTTTCTGGGGTGGTCGAGAAGGTTATCAAACTCTATTGAACACAGATATGGGAAGAGAGCTTGATCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT