Sequence
atgc intronic sequence ATGC exonic sequence...catatatgaattcaaatgtaaaaattaactgacatctaattcaagctgaagttttagtttgtgattccttttattgacttgacaatttaactttgtccagTCATTGGGGGTGCTTTGTGAAGCTCAGTACTTTCAGAATGTTATGCGCGTCGGTTTTCGGCTAAGATCAACTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os04g52900.1 (Oryza sativa), 3'ss of exon 9
--------------------------------------------------------catatatgaattcaaatgtaaaaattaactgacatctaattcaag-ctgaagttttagtttgtgattccttttattgacttgacaatttaactttgtccagTCATTGGGGGTGCTTTGTGAAGCTCAGTACTTTCAGAATGTTATGCGCGTCGGTTTTCGGCTAAGATCAACTCTG
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gtatggattattttcttctattgcatgtttcacacttatatgtcttgttgattcagtgtatttgaacttccaagcaacaattatgctgcatgtgagccaaaactgga---cagacttttgatcacttacctt---ttg----tttaccattctgcagTCACTGGGTGTTCTTTCTGAAGCACAGTACTTTCAGAATGTCATGCGAACGGGTTTCAGGTTGAGGTCAACATTG
upper sequence: Vv10s0003g04470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G46940.1 (Glycine max), 3'ss of exon 10
catatatgaattcaaatgtaaaaat-taactgacatctaattcaagctgaagtt-ttagtttgtgattccttttattgacttgacaatttaactttgtccagTCATTGGGGGTGCTTTGTGAAGCTCAGTACTTTCAGAATGTTATGCGCGTCGGTTTTCGGCTAAGATCAACTCTG
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-atgca-gagtttgtttttaatatcatagctgtcttgtacttttgatagcatttattaacatgaagaaaagaacaattaacgagtcgttcaactcttttcagGCAGTTGGTGTTCTTTGTGAAGCACAGTATTTCCAGAATGTTTTGCGTGTTGGTTTTCGGCTTAGATCAACTTTG
upper sequence: Vv10s0003g04470.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G30410.1 (Arabidopsis thaliana), 3'ss of exon 11
-----------------catatatgaattcaaa------tgtaaaaattaactgacatctaatt---caagctgaagttttagtttgtgattccttttattgacttgacaattt-aactttgtc-cagTCATTGGGGGTGCTTTGTGAAGCTCAGTACTTTCAGAATGTTATGCGCGTCGGTTTTCGGCTAAGATCAACTCTG
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gtatgtatgacaaaatttgtctctgatctctaactatcatgtataattttctcatcattttatttctcatattgttgattttcttgtcaaaaccattgaaaagcttttccatttcgattttgctacagACACTTGGAGTGCTTTGTGAAGCCCAGTATTTTCAGAATGTTTGGCGGGTGGGATTTCGGTTGAGATCAACTTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgaagttttagtttgtgattccttttattgacttgacaatttaactttgtccagTCATTGGGGGTGCTTTGTGAAGCTCAGTACTTTCAGAATGTTATGCGCGTCGGTTTTCGGCTAAGATCAACTCTG
ctttgtcc CT-rich tract
aatttaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catatatgaattcaaatgtaaaaattaactgacatctaattcaagctgaagttttagtttgtgattccttttattgacttgacaatttaactttgtccagTCATTGGGGGTGCTTTGTGAAGCTCAGTACTTTCAGAATGTTATGCGCGTCGGTTTTCGGCTAAGATCAACTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - -aaatgtaa
- - - - - - - - - - -aaattaa
- - - - - - - - - - - - - - ctgacat
- - - - - - - - - - - - - - - - - - - - tcaagct