Sequence
atgc intronic sequence ATGC exonic sequencegtgagtgaccatttgttcttttatcctatttttatcatctaactacttgccctggaaaatcagtgctgggtttataaaataaagaagaaacttacttaagaccagatggaatgtgtatcacttttctgagggtcatttgtatttatcatgtagGGTTACTGGACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 10
gtgagtgaccatttgttcttttatcctatttttatcatctaactacttgccctggaaaatcagtgctgggtttataaaataaagaagaaacttacttaagaccagatggaatgtgtatcacttttctgagggtcatttgtatttatcatgtagGGTTACTGGACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGA
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--------gtatgtgatctttcattct--tgtcatcagtatattgattgaat--aaaaatctgtatt---tttatcaaa--aagaaaaaaacaatggaccactattttaactgttgg--atcttatggtttgtcatttacatttattttgtagGGTTACGGGACTCAAAATTGAGCCCCTTGGGGAGACTTCCATTGCATCTACAATATCATACCTTGATAATGCATTCGTCTACGTTGGTTCAAGTTATGGA
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA05G30530.1 (Glycine max), 3'ss of exon 10
gtgagtgaccatttgttcttttatcctatttttatcatctaactacttgccctggaaaatcagtgctgggtttataaaataaagaagaaacttacttaagaccagatggaatgtgtatcacttttctgagggtcatttgtatttatcatgtagGGTTACTGGACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGA
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----------gtatgtgatct---ctcattctcgtcatc--agtatattgtttgaataaacaatg-tgtatttttataaaaaaaacacaatggacc----actattttaactgttga--atcttatggtttgtcatttacatttattttgtagGGTTACTGGACTCAAAATTGAGCCCCTTGGGGAGACTTCCATTGCGTCTACAATATCATACCTTGATAATGCATTCGTCTACATTGGTTCTAGTTATGGA
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgagtgaccatttgttcttttatcctatttttatcatctaactacttgccctggaaaatcagtgctgggtttataaaataaagaagaaacttacttaagaccag-atggaatgtgtatcacttttctgagggtcatttgtatttat-catgtagGGTTACTGGACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGA
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------------------------------------------------------gtgagtgtgca-tgtgtgcttactcttacatccatccatattcgaaataattaaaagctctttagaacttatttac------tttgtatttgtgtctgaagGGTCACTGGCCTAAAAATTGAGCTTTTGGGTGAAACATCTATTGCATCGACTATATCGTACCTTGACAATGCCGTTGTCTTTGTCGGCTCAAGCTATGGT
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgagtgaccatttgttcttttatcctatttttatcatctaactacttgccctggaaaatcagtgctgggtttataaaataaagaagaaacttacttaagaccagatggaatgtgtatcacttttctgagggtcatttgtatttatcatgtagGGTTACTGGACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGA
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--------------------------------------gtgagttgatattacaaagctcttttttttttttttttttgcatctacagagctcttttgaaatgaatgataatgtggata----ttctga-------ctttatttatc-tgaagGGTCACTGGCCTCAAAATTGAGCTTTTGGGTGAAACCTCTATTGCATCTTCCATCTCGTATCTGGACAATGCTGTCGTCTTTGTCGGTTCAAGCTATGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaccagatggaatgtgtatcacttttctgagggtcatttgtatttatcatgtagGGTTACTGGACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGA
atttgtatttatcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtgaccatttgttcttttatcctatttttatcatctaactacttgccctggaaaatcagtgctgggtttataaaataaagaagaaacttacttaagaccagatggaatgtgtatcacttttctgagggtcatttgtatttatcatgtagGGTTACTGGACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT