Sequence
atgc intronic sequence ATGC exonic sequence...tgaaagctttaggataagctgtttttttggtgaacaatgttgactttattttatacatgtcaaaacgatcaagatactaatgcaataatttatttgacagTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACGTTTCCGTTTCTCTTTGCCGTGATGTTTGGGGATTGGGGTCATGGAATATGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA15G04970.1 (Glycine max), 3'ss of exon 10
tgaaagctttaggataagctgtttttttggtgaacaatgttgactttattttatacatgtca-aaacgatcaagatactaatgcaataatttatttgacagTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACGTTTCCGTTTCTCTTTGCCGTGATGTTTGGGGATTGGGGTCATGGAATATGC
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-ggtggatacaaattatctagcttactagctatttcttcttagctatataataaatccatgacagccgattagattcctaattagtccttttacttggcagTGTTGCAAGATACCAAGAAGCAAATCCTGCAGTTTACACAACTATTATATTCCCTTTCCTATTTGCTTTGATGTTTGGGGACTGGGGTCATGGAATTTGC
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G15730.1 (Glycine max), 3'ss of exon 10
tgaaagctttaggataagctgtttttttggtgaacaat---gttgactttattttatacatgtcaaaacga-tcaagatactaatgcaataatttatttgacagTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACGTTTCCGTTTCTCTTTGCCGTGATGTTTGGGGATTGGGGTCATGGAATATGC
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----agagttgaataatgccagtttaggatggaaccattattttgcaattttgctataaaaactgaaaagactcctagtcctaatgagcccttgtacttggcagTGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTATACAACTATTATATTCCCATTTCTTTTTGCGGTTATGTTTGGCGACTGGGGTCATGGAATTTGC
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G40430.1 (Glycine max), 3'ss of exon 10
tgaaagctttaggataagctgtttttttggtgaacaatgttgactttattttatacatgtcaaaac-gatcaagatactaatgcaataatttatttgacagTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACGTTTCCGTTTCTCTTTGCCGTGATGTTTGGGGATTGGGGTCATGGAATATGC
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tggtggatacaa-attatctagcttactagctatttattctcgctatataataaattcatgacaactgattagattcctaattggcccttttacttggcagTGTTGCAAGATACCAAGAAGCAAATCCTGCAGTTTACACAACTGTTATATTCCCTTTCCTGTTTGCTTTGATGTTTGGGGACTGGGGTCATGGAATTTGC
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G07740.1 (Glycine max), 3'ss of exon 10
-tgaaagctttaggataagctgtttttttggtgaacaatgttgactttattttatacatgtcaaaacga-tcaagatactaatgcaataatttatttgacagTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACGTTTCCGTTTCTCTTTGCCGTGATGTTTGGGGATTGGGGTCATGGAATATGC
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atgcccatgtcaata-gatcaataggatagaactgctattctgcgattttgctataaaaactgaaaagactcctagtcctaatg-agccttgtacttggcagTGTTGCAAGATATCAAGAAGCAAATCCTGCAGTTTATACCACTATTATATTCCCATTTCTTTTCGCGGTTATGTTTGGTGACTGGGGTCATGGAATTTGC
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: EFJ20446 (Selaginella moellendorffii), 3'ss of exon 9
tgaaagctttaggataagctgtttttttggtgaacaatgttgactttattttatacatgtcaaaacgatcaagatactaatgcaataatttatttgacagTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACGTTTCCGTTTCTCTTTGCCGTGATGTTTGGGGATTGGGGTCATGGAATATGC-
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---------------------------------gtaacagcaagctctttctggctttcacgtttcgttc------ttactgtgttaactgtcagtgtagGGTGGCGAGATACAAGGAAGCAAATCCTGCTGTGTATACAATAGTTACTTTTCCGTTTCTTTTCGCTGTGATGTTTGGGGATTGGGGGCACGGGAT-TGTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattttatacatgtcaaaacgatcaagatactaatgcaataatttatttgacagTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACGTTTCCGTTTCTCTTTGCCGTGATGTTTGGGGATTGGGGTCATGGAATATGC
tactaat putative branch site (score: 1)
tttattt putative PPT
atactaatgcaataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaaagctttaggataagctgtttttttggtgaacaatgttgactttattttatacatgtcaaaacgatcaagatactaatgcaataatttatttgacagTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACGTTTCCGTTTCTCTTTGCCGTGATGTTTGGGGATTGGGGTCATGGAATATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - aggataa
- - - - - - - - - - - - - - - - - caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - acatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaatgc