Sequence
atgc intronic sequence ATGC exonic sequencegtaagcgtcgcctccatgcagttttaatttcgtaatgaatttgatgaatgtaaaggatgatgatgatatatgcttaaatgcagGTTATCCTATTGGTGGGAACCAAGTTACAGGTGATCATAACCAAGATGGGGCTTAGAATTCAAGAAAGGGGAGAGGTTGTGAAGGGAGTGCCGGTTGTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA11G15920.1 (Glycine max), 3'ss of exon 10
----------gtaagcgtcgcctccatgcagttttaatttcgtaatgaatt-tgatgaatgtaaaggatgatgatgatatatgcttaaa-tgcagGTTATCCTATTGGTGGGAACCAAGTTACAGGTGATCATAACCAAGATGGGGCTTAGAATTCAAGAAAGGGGAGAGGTTGTGAAGGGAGTGCCGGTTGTTC
| || | | | | | | ||| || | || |||| | | | || | || | | |||| || || | ||| | || |||||||||||| | || |||||||||||| ||||||| || ||||||||| |||| |||||||| | ||||| ||||| | ||||
gtgagcacatgcaatccccactttaaattaatttggtccaagtgaccgataatgatatccatctaatttaatcttataatgttcataaaatgtagATAATCTTGTTAGTGGGAACCAAGCTTCAAGTGATCATAACCGAGATGGGTCTAAGAATTCAACAAAGAGGAGAGGTCCTCAAGGGTGTGCCCTTGGTTC
upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G40300.1 (Glycine max), 3'ss of exon 10
gtaagcgtcgcctccatgcagttttaatttcgtaatgaatt--tgatgaatgtaaagga----tgatgatgatatatgcttaaatgcagGTTATCCTATTGGTGGGAACCAAGTTACAGGTGATCATAACCAAGATGGGGCTTAGAATTCAAGAAAGGGGAGAGGTTGTGAAGGGAGTGCCGGTTGTTC
|||||| |||||| | | ||| |||| |||| || | | | || || || | || ||||| || | | ||||| || ||||| ||| | || ||||||||||| |||||||| | ||||||||| || | ||||||||||| ||||||||||| | || |
gtaagca-------catgcaatgcctctagtaaaataaattgatgatatatattttgtctttctaattataatgt-cgccaaaatgtagATCGTTCTATTAGTTGGAACAAAGCTGCAAGTGATCATAACAAAGATGGGTCAAAGAATTCAACAACGAGGAGAGGTTGTAAAGGGAGTGCCACTGGTGC
upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G29330.1 (Glycine max), 3'ss of exon 10
gtaagcgtcgcctccatgcagttttaatttcgtaatgaatttgatgaatgtaaaggatgatgatgatatatg---cttaaatgcagGTTATCCTATTGGTGGGAACCAAGTTACAGGTGATCATAACCAAGATGGGGCTTAGAATTCAAGAAAGGGGAGAGGTTGTGAAGGGAGTGCCGGTTGTTC
|||||| | | |||||| | || |||| | | ||| | | || || || ||| | ||||| || || | ||||| || ||| ||||||| || ||||| ||||| |||||||| | ||||||||| || | ||||||||||| ||||||||||| | || |
gtaagcacacgcaataccttagcttaatta-atgatatatttattttttctaattg-taattataattaatgtccccaaaatgtagATTGTTCTATTAGTTGGAGCCAAGTTGCAAGTGATAATAACAAAGATGGGTCAAAGAATTCAACAACGAGGAGAGGTTGTAAAGGGAGTGCCACTGGTGC
upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G29310.1 (Glycine max), 3'ss of exon 10
gtaagcgtcgcctccatgcagttttaatttcgtaatgaatttgatgaatgtaaaggatgatgatgatatatgcttaaatgcagGTTATCCTATTGGTGGGAACCAAGTTACAGGTGATCATAACCAAGATGGGGCTTAGAATTCAAGAAAGGGGAGAGGTTGTGAAGGGAGTGCCGGTTGTTC
|||||| | | |||| | | || |||| | | ||| || || || || | | ||||| || || | ||||| || ||||||||| | || ||||| ||||| |||||||| | ||||||||| || | ||||| ||||| ||||||||||| | || |
gtaagcacatgcaatgacttatgttaacta-atgatatatttcttttttctaatt-ataattataatgtccaca-aaatgtagATTGTTCTATTAGTTGGAACCAAGCTGCAAGTGATAATAACAAAGATGGGTCAAAGAATTCAACAACGAGGAGAAGTTGTAAAGGGAGTGCCACTGGTGC
upper sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA12G07530.1 (Glycine max), 3'ss of exon 10
----gtaagcgtcgcctccatgcagttttaatttcgt---aatgaatt----tgatgaatgtaaaggatgatgatgatatatgctt----aaatgcagGTTATCCTATTGGTGGGAACCAAGTTACAGGTGATCATAACCAAGATGGGGCTTAGAATTCAAGAAAGGGGAGAGGTTGTGAAGGGAGTGCCGGTTGTTC
| | | ||| ||||||| || |||||| |||| || | || | || |||| ||| ||||| || | ||| | || |||||||||||| | || ||||||||||| ||||||| || | ||||||| |||| |||||||| | ||||| ||||| | || |
gtgagcacatgcaattcccactttaaattaatttggtccaaatgaacgataatgatatatccatctaatt-taatcttataatcttcataaaatgtagATAATCTTGTTAGTGGGAACCAAGCTTCAAGTGATCATAACTGAGATGGGTCTAAAAATTCAACAAAGAGGAGAGGTCCTTAAGGGTGTGCCCTTGGTAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcgtaatgaatttgatgaatgtaaaggatgatgatgatatatgcttaaatgcagGTTATCCTATTGGTGGGAACCAAGTTACAGGTGATCATAACCAAGATGGGGCTTAGAATTCAAGAAAGGGGAGAGGTTGTGAAGGGAGTGCCGGTTGTTC
atttgat putative branch site (score: 5)
atatatgcttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcgtcgcctccatgcagttttaatttcgtaatgaatttgatgaatgtaaaggatgatgatgatatatgcttaaatgcagGTTATCCTATTGGTGGGAACCAAGTTACAGGTGATCATAACCAAGATGGGGCTTAGAATTCAAGAAAGGGGAGAGGTTGTGAAGGGAGTGCCGGTTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG