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...caaatactctacttccacacttcatttgtagttttaagtttcaacttgctattgttatatttaagatggtatataaatttcaatttttcattttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAGGAGCCTGAAATGGCTCAATCTGGCAAAGAGGAGGGACCAGAGACTGAAG
species | Vitis vinifera |
transcript | Vv05s0020g04180.t01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAGEST: gi|110358405|gb|EC922592.1|EC922592
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAGEST: gi|110419083|gb|EC985277.1|EC985277
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCGTTGGGTTCACAGEST: gi|110363558|gb|EC927155.1|EC927155
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAGEST: gi|110701353|gb|EE078829.1|EE078829
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAGEST: gi|161718798|gb|FC068610.1|FC068610
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAGEST: gi|18458191|gb|BM436469.1|BM436469
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
EST: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAG ATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
genomic: AAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGgtatgctctc ... ttttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAG
ttgctattgttatatttaagatggtatataaatttcaatttttcattttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAGGAGCCTGAAATGGCTCAATCTGGCAAAGAGGAGGGACCAGAGACTGAAG
tttttcatttt CT-rich tract
ttatatttaagatggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatactctacttccacacttcatttgtagttttaagtttcaacttgctattgttatatttaagatggtatataaatttcaatttttcattttaagcagATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAGGAGCCTGAAATGGCTCAATCTGGCAAAGAGGAGGGACCAGAGACTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
caaatac
- - - - - - - ccacact
- - - - - - - - - - - - - - - - - - - - - - cttgcta