Sequence
atgc intronic sequence ATGC exonic sequencegtaactgtaacacttccagcaactctgtttcttgttctattcttttccccagatgcctaattgaaagccatatatatatatacatctgagaatctgtatcctgtttctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g00900.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G17910.1 (Glycine max), 3'ss of exon 10
gtaactgtaacacttccagcaactctgtttcttgttctattcttttccccagatgcctaattgaaagccatatatatatatacatctgagaatctgtatcctgtttctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
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------------------gtaacttactaatttgcacatcttttcttcttcactactataattacttcttcctaaactaatagat-tgactatac-tgctataataaacagACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACGGTGATCTCATTATTACAAAGATTTTATGATCCAGACTTGGGTAACATTACACTGGATG
upper sequence: Vv05s0020g00900.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G04590.1 (Glycine max), 3'ss of exon 10
gtaactgtaacacttccagcaactctgtttcttgttctattcttttccccagatgcctaattgaaagccatatatatatatacatctgagaatctgtatcctgtttctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
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------gtaac-cttttagt--ttgcacatcttgt-ctcttcttcact----actctaaattgttcatcctaaacttatagac---tgagtatactgata-taatgaacagACAGTAGCACTGGTTGGAGAAAGTGGATGTGGAAAATCGACAGTGATCTCATTGTTACAAAGATTTTATGACCCAGACTCAGGTCACATTATACTGGATG
upper sequence: Vv05s0020g00900.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G17930.2 (Glycine max), 3'ss of exon 10
gtaactgtaacacttccagcaactctgtttcttgttc-tattcttttccccagatgcctaattgaaagccatatatatatatacatctgagaatctgtatcctgtttctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
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------------------gtaactttctaatttgcacatcttgccttcttcactactctaatttgtt-cttcctaaactaatggat-tgagtatactgatacaataaa-cagACAGTAGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCATTATTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATG
upper sequence: Vv05s0020g00900.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G17920.1 (Glycine max), 3'ss of exon 10
gtaactgtaacacttccagcaactctgtttcttgttctattcttttccccagatgcctaatt-gaaagccatatatatatatacatctgagaatctgtatcctgtt-----tctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
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------------------------------------------------gtaactttctaattagcacatcttgtcttcttctctactctaaattgactatactgttaaaataaacagACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATTTCACTATTACAAAGGTTTTATGACCTAGATTCAGGTCACATTACACTGGACC
upper sequence: Vv05s0020g00900.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G04620.1 (Glycine max), 3'ss of exon 11
gtaactgtaacacttccagcaactctgtttcttgttctattcttttccc--cagatgcctaattgaaa---gccatatatatatatac-atctgagaatctg-tatcctgtttctc------------agACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
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gtaacaccaactgatacactggtttgttttgatgcataattcttataggaatacatgattctttgaaacaacccatctaggtctttcttaacagagaatctaatagtttgattttcctgatgaaaatcagACAGTTGCTCTAGCAGGCGAAAGTGGAAGTGGAAAGTCAACAGTAATCTCATTGCTGCAAAGATTTTATGAGCCAGATTCAGGTCAGATTACACTGGATG
upper sequence: Vv05s0020g00900.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA13G17880.1 (Glycine max), 3'ss of exon 6
gtaact-gtaacacttccagcaactctgtttcttgttctattcttttccccagatgcctaatt-------gaaagccatata-tatatatacatctgagaatctg----------tatcctgtt---tctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
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gtaacttaccaaacaatacattggtttgtttgatgcataattctcatag--aaatacataattctttcaaacaaaccatctagttcttttttaatggagaatctgagagttggattatcctgatggaaatcagACGGTTGCTCTAGCAGGCGAAAGTGGAAGTGGAAAGTCAACAGTAATCTCATTGCTGCAAAGATTTTATGAGCCAGATTCAGGTCAGATTACACTGGATG
upper sequence: Vv05s0020g00900.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA17G04600.1 (Glycine max), 3'ss of exon 21
gtaactgtaacacttccagcaactctgtttcttgttctattcttttccccagatgcctaattgaaagccatatatatatatacatctgagaatctgtatcctgtttctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
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------gtaac-tttctaat--ttgcacatcttgtcttcttcactactttaaacttttcttcctaaacaa-atagattaactatactgataaagtaaa----------cagACAGTTGCACTGGTTGGAGAAACTGAAAGTGGAAAATCAACGGTGATCTTGTTATTACGAAGATTTTATGATCCAGACTCGGGTCACATTACTCTGGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctaattgaaagccatatatatatatacatctgagaatctgtatcctgtttctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
gcctaat putative branch site (score: 3)
tcctgtttctc putative PPT
atatatatatatacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactgtaacacttccagcaactctgtttcttgttctattcttttccccagatgcctaattgaaagccatatatatatatacatctgagaatctgtatcctgtttctcagACAGTTGCCCTGGTTGGAGAAAGTGGGTGTGGAAAATCCACTGTGATCTCATTACTGCAGAGATTTTATGATCCTGATTCAGGTCGTATAACACTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG