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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagatttcattttgtcttctcatttctgttttcaactaggaatttcataagaaaatctttgtaccatgtttgcttgcttttagtttctaagccaacctttgctgttatgtataatcagGGTAAGCCCGTCGAAGACGCCTGTTCGGCCACGTGCTCCTCGTCTTCCTATACATTAATCATCTTTGCAGGTCCAGAGACTGATATTAGTACCCAATTTA

Basic information

species Vitis vinifera
transcript Vv02s0025g02740.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34416313|gb|CF415067.1|CF415067
EST:     ATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG                         GGTAAGCCCGTCGAAGACGCCTGTTCGGCCACGTGCTCCTCGTCTTCCTAT
genomic: ATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAGgtcagatttc ... gtataatcagGGTAAGCCCGTCGAAGACGCCTGTTCGGCCACGTGCTCCTCGTCTTCCTAT
EST: gi|30129918|gb|CB915257.1|CB915257
EST:     ATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAG                         GGTAAGCCCGTCGAAGACGCCTGTTCGGCCACGTGCTCCTCGTCTTCCTAT
genomic: ATTGCTGCTCTCAACTGCAGCGGTGTTGTGCTTGGTTCCTTGCCGATAAGgtcagatttc ... gtataatcagGGTAAGCCCGTCGAAGACGCCTGTTCGGCCACGTGCTCCTCGTCTTCCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgtttgcttgcttttagtttctaagccaacctttgctgttatgtataatcagGGTAAGCCCGTCGAAGACGCCTGTTCGGCCACGTGCTCCTCGTCTTCCTATACATTAATCATCTTTGCAGGTCCAGAGACTGATATTAGTACCCAATTTA
                                         ttatgtataat  TA-rich tract