Sequence
atgc intronic sequence ATGC exonic sequence...ttggagctcttgtgaacctgatttcttacctcttgccatgacttgttggaattttgggactcacatctttaacattgctgtactgttatgacatttgcagAAACTTGGGCTAAAGTTCGGTTCATTCAGTCTCAGTATGGGAGAAGCCATGACAATGCTTCTTAATATCTTGAATTCCCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01440.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G00850.1 (Glycine max), 3'ss of exon 1
ttggagctcttgtgaacctgatttcttacctcttgccatgacttgttggaattttg----ggactcacatctttaa---cattgctgtactgttatgacatttgcagAAACTTGGGCTAAAGTTCGGTTCATTCAGTCTCAGTATGGGAGAAGCCATGACAATGCTTCTTAATATCTTGAATTCCCCTG--------------------
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-------atgcgtaaagttaacta-tggccttttgc-atgtttatttgatattttatcatgattttacctctcttaactcttcattgttatgatgtaacgttgtgacagGCCTGATGTTTCTTGGAGCTCTTGTGAACCTGATTTCTAACCTCTTGCCATGTCTTTCTTCGAAGTTTGGGACTCACTTCTTTAACCTTGCTGTACTGTT
upper sequence: Vv19s0014g01440.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G36510.1 (Glycine max), 3'ss of exon 1
--ttggagctcttgtgaacctgatttc-ttacctcttgccatgacttgttggaattttgggactcaca--tctttaacatt--gctgtactgttatgaca--tttgcagAAACTTGG-GCTAAAGTTCGGTTCATTCAGTCTCAGTATGGGAGAAGCCATGACAATGCTTC---TTAATATCTTGAATTCCCCTG------
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gcataaagttaacaatggcctttttgcatttctatttgatatt-tttatcatggttttacctctcttaactcttcattgttatgatgtaacgttgtgacagGCCTGATGTTTCTTGGAGCTCTTGTGAACCTGATTTCTTAACCTCTTGCCATGTCTTTCTTCGAAGTTTGGGACTCACTTCTTTAACCTTGCTGTACTGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggaattttgggactcacatctttaacattgctgtactgttatgacatttgcagAAACTTGGGCTAAAGTTCGGTTCATTCAGTCTCAGTATGGGAGAAGCCATGACAATGCTTCTTAATATCTTGAATTCCCCTG
tttaacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttggagctcttgtgaacctgatttcttacctcttgccatgacttgttggaattttgggactcacatctttaacattgctgtactgttatgacatttgcagAAACTTGGGCTAAAGTTCGGTTCATTCAGTCTCAGTATGGGAGAAGCCATGACAATGCTTCTTAATATCTTGAATTCCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - -gctcttg
- - - - - - - - cctgatt
- - - - - - - - - - - - - - - -cttgcca
- - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgct