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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttcttttcccttcctcccctgcaaaatccaccaaaatagaacaactaataaaatttttgcattcttgtcaaaccagcggaggtttaggttaaatcgatacattatatttgattttttttttttgttggatcgttgttttgatggttgcgttattgctgcatttttagGGGAATTTATATAACTGGAAGTATTTTAATTGGTGCCATCAAAGCTCCTCGGATTACTTCAAAAAATCTGATTAGATGAGTACTTCAACTTTCTTTCTTT

Basic information

species Vitis vinifera
transcript Vv18s0086g00420.t01
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttttgttggatcgttgttttgatggttgcgttattgctgcatttttagGGGAATTTATATAACTGGAAGTATTTTAATTGGTGCCATCAAAGCTCCTCGGATTACTTCAAAAAATCTGATTAGATGAGTACTTCAACTTTCTTTCTTT
                       ttttgat  putative branch site (score: 4)
                                              cattttt  putative PPT
     ttttttgtt  TA-rich tract