Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcaaatgtttcttttgggaaacctggagccttaagcatttgttgtactttctatgtggttatgatgtattaatctaataattattgttatgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGATTGTGACTGGTGGTCTGATATCACTATCAGAGCAGGAGCTGGTGGACTG

Basic information

species Vitis vinifera
transcript Vv18s0001g09990.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g09990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G166281_T01 (Zea mays), 3'ss of exon 1
----ctcaaatgtttcttttgggaaacctggagccttaagc-atttgttgtactttctatgtggttatgatgtattaatctaataattattgttatgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGATTGTGACTGGTGGTCTGATATCACTATCAGAGCAGGAGCTGGTGGACTG
       |  || |  |  | ||   |||      ||||   || ||  | | ||   |  || |  |||||  ||| |   ||    ||  | ||    |  ||||||||||||||| ||||| ||||| || ||||||||||| || ||| ||||||| || || |   |||| ||  | || || || ||||| || |||||
tatagctatgtgctgttactcggctgcctt---ttttaattgatatgcgggatttaaca-atgatactgatggtttattgacattgaaatc-tgatctctttcagGGAGCTGTTGGGCTTTCTCAACAATAGCAGCTGTGGAAGGCATCAACCAGATTGTTACAGGCGACTTGATCTCCTTGTCTGAACAAGAGCTTGTCGACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713109|gb|EE088740.1|EE088740
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|71861600|gb|DT010655.1|DT010655
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGA
EST: gi|351026494|gb|FQ428506.1|FQ428506
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110396416|gb|EC962101.1|EC962101
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351028606|gb|FQ446279.1|FQ446279
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|352777984|gb|FQ467037.1|FQ467037
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351027910|gb|FQ425811.1|FQ425811
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|349828206|gb|FQ416159.1|FQ416159
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAACGGATTAACAAAA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110699028|gb|EE077198.1|EE077198
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|349825324|gb|FQ418056.1|FQ418056
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110718246|gb|EE094863.1|EE094863
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351012561|gb|FQ430125.1|FQ430125
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351055663|gb|FQ452128.1|FQ452128
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351030869|gb|FQ438905.1|FQ438905
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|34548523|gb|CF516755.1|CF516755
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351027037|gb|FQ439897.1|FQ439897
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110723012|gb|EE099834.1|EE099834
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|30301493|gb|CB978287.1|CB978287
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110383097|gb|EC947448.1|EC947448
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110711563|gb|EE088188.1|EE088188
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351016558|gb|FQ423985.1|FQ423985
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|352790105|gb|FQ479715.1|FQ479715
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|30125064|gb|CB910403.1|CB910403
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351021525|gb|FQ446069.1|FQ446069
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351054607|gb|FQ456804.1|FQ456804
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|30305392|gb|CB982186.1|CB982186
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110713526|gb|EE089522.1|EE089522
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110720873|gb|EE097186.1|EE097186
EST:     CAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: CAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110389244|gb|EC954067.1|EC954067
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110724331|gb|EE100064.1|EE100064
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110722637|gb|EE099042.1|EE099042
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351017046|gb|FQ424473.1|FQ424473
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|161713727|gb|FC063752.1|FC063752
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110698496|gb|EE076058.1|EE076058
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351031197|gb|FQ445024.1|FQ445024
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351018598|gb|FQ424705.1|FQ424705
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351024996|gb|FQ433413.1|FQ433413
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|161714824|gb|FC063272.1|FC063272
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110711579|gb|EE088220.1|EE088220
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351028920|gb|FQ434921.1|FQ434921
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351024533|gb|FQ426342.1|FQ426342
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110719100|gb|EE096693.1|EE096693
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGGAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|349825882|gb|FQ423177.1|FQ423177
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|71864193|gb|DT013248.1|DT013248
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGAT
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGAT
EST: gi|110701210|gb|EE078539.1|EE078539
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|352794467|gb|FQ481700.1|FQ481700
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|349828447|gb|FQ417189.1|FQ417189
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351013252|gb|FQ424957.1|FQ424957
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110702914|gb|EE079302.1|EE079302
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351026453|gb|FQ428465.1|FQ428465
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|37185718|gb|CF605071.1|CF605071
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCAT
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCAT
EST: gi|351030244|gb|FQ432182.1|FQ432182
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|37184962|gb|CF604315.1|CF604315
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|161713020|gb|FC062442.1|FC062442
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110699105|gb|EE077130.1|EE077130
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351028538|gb|FQ444819.1|FQ444819
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110720776|gb|EE096992.1|EE096992
EST:     CAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: CAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351021801|gb|FQ437186.1|FQ437186
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACGATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110687661|gb|EE065325.1|EE065325
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|349833421|gb|FQ420167.1|FQ420167
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351018431|gb|FQ439243.1|FQ439243
EST:     TGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGATTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAG
genomic: TGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAG-TTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAG
EST: gi|110711545|gb|EE088146.1|EE088146
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110710542|gb|EE086979.1|EE086979
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|349826685|gb|FQ418776.1|FQ418776
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351019412|gb|FQ429547.1|FQ429547
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|33409759|gb|CF215386.1|CF215386
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|161719029|gb|FC067649.1|FC067649
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|161712427|gb|FC061732.1|FC061732
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110712789|gb|EE088140.1|EE088140
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351032297|gb|FQ461550.1|FQ461550
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|349826911|gb|FQ419002.1|FQ419002
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|349826851|gb|FQ418942.1|FQ418942
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|110724029|gb|EE099497.1|EE099497
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAAGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|351014188|gb|FQ434777.1|FQ434777
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
EST: gi|349832805|gb|FQ422893.1|FQ422893
EST:     TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCG                         GGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA
genomic: TTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGgtaagttata ... tgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttctatgtggttatgatgtattaatctaataattattgttatgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGATTGTGACTGGTGGTCTGATATCACTATCAGAGCAGGAGCTGGTGGACTG
              ttatgatgtattaatc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctcaaatgtttcttttgggaaacctggagccttaagcatttgttgtactttctatgtggttatgatgtattaatctaataattattgttatgaaatgaagGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGATTGTGACTGGTGGTCTGATATCACTATCAGAGCAGGAGCTGGTGGACTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - -ggaaacc
- - - - - - - - - - - - tggagcc
- - - - - - - - - - - - - - - - - -gcatttg