Sequence
atgc intronic sequence ATGC exonic sequence...tttactatttattatgttttcctttgcttcaaatctactttccaccaatggcttttatcattcggatgcttgattttcaatttgtttttgggcatggcagGGTCTTTTGCAGTATTTCAATCTTGTAGAAGGGTGTCTCACGATGATCAAAGCATATCAGAAGGACAAGAATTTCACATACGACTGGATAGTTCGGACTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g00130.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G76250.1 (Arabidopsis thaliana), 3'ss of exon 1
----tttactatttattatgttttcctttgcttcaaatctact-ttccaccaatggcttttatcattcggatgcttgattttcaatttgtttttgggcatggcagGGTCTTTTGCAGTATTTCAATCTTGTAGAAGGGTGTCTCACGATGATCAAAGCATATCAGAAGGACAAGAATTTCACATACGACTGGATAGTTCGGACTC
|||| || | || ||| | || | | || | || | | ||| ||| || ||| ||| || | ||| ||||| | || ||||| ||||| ||||| ||||| || |||||||||| || ||||| || || || || || |||||||||||||||||||| ||||| |
gcattttaacatcgagta-atttgtttctgttatattattattattattttgttaatccattattttctcatgtgtgttttcttattggtctca----atgacagGGCTTATTACAGTACTTCAACCTTGTGGAAGGTTGCATCACGATGATAAAGGCATACCAAAACGAGAATAACTTCACATACGACTGGATAGTCCGGACCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caatggcttttatcattcggatgcttgattttcaatttgtttttgggcatggcagGGTCTTTTGCAGTATTTCAATCTTGTAGAAGGGTGTCTCACGATGATCAAAGCATATCAGAAGGACAAGAATTTCACATACGACTGGATAGTTCGGACTC
gcttgat putative branch site (score: 5)
attttcaatttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttactatttattatgttttcctttgcttcaaatctactttccaccaatggcttttatcattcggatgcttgattttcaatttgtttttgggcatggcagGGTCTTTTGCAGTATTTCAATCTTGTAGAAGGGTGTCTCACGATGATCAAAGCATATCAGAAGGACAAGAATTTCACATACGACTGGATAGTTCGGACTC
- - - - - - - - - - cctttgc
- - - - - - - - - - - - - - - - - - - - -ccaccaa
- - - - - - - - - - - - - - - - - - - - - - - - tggcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgct